Difference between revisions of "TSS:Mm 99511.1"
From referenceTSS
| Line 2: | Line 2: | ||
|2010015A21Rik= | |2010015A21Rik= | ||
|AI849317= | |AI849317= | ||
| − | |all_trans=ENSMUST00000129870.7:0 AK199070:23 ENSMUST00000139374.7:48 ENSMUST00000152971.1:50 | + | |all_trans=ENSMUST00000129870.7:0 AK199070:23 ENSMUST00000139374.7:48 ENSMUST00000152971.1:50 AK008170:80 ENSMUST00000147701.1:82 ENSMUST00000142630.1:226 AK181561:251 AK183793:251 AK203233:251 AK148438:499 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.03 | |cpg_percent=0.03 | ||
| Line 11: | Line 11: | ||
|entrez_id=67131 | |entrez_id=67131 | ||
|gc_percent=0.522388 | |gc_percent=0.522388 | ||
| − | |gene_alias=2010009P05Rik | + | |gene_alias=2010009P05Rik{{!}}2010015A21Rik{{!}}AI849317 |
|gene_description=acyl-Coenzyme A binding domain containing 4 | |gene_description=acyl-Coenzyme A binding domain containing 4 | ||
|gene_id=67131 | |gene_id=67131 | ||
| Line 24: | Line 24: | ||
|nearest_refseq=NM_025988 | |nearest_refseq=NM_025988 | ||
|nearest_unigene=Mm.390367 | |nearest_unigene=Mm.390367 | ||
| − | |num_trans= | + | |num_trans=11 |
|species=mouse | |species=mouse | ||
|start=103103015 | |start=103103015 | ||
|start_of_center_position=103103020 | |start_of_center_position=103103020 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-33(GGGTATAAAAGA,-,0.00) |
|transcript_name=ENSMUST00000129870.7 | |transcript_name=ENSMUST00000129870.7 | ||
|tss_classification=yes | |tss_classification=yes | ||
Revision as of 03:53, 22 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 103103020 |
|---|---|
| End of the center position in the TSS region: | 103103021 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENSMUST00000129870.7 |
|---|---|
| Distance: | 0 |
| Num_trans: | 11 |
| All_trans: | ENSMUST00000129870.7:0 AK199070:23 ENSMUST00000139374.7:48 ENSMUST00000152971.1:50 AK008170:80 ENSMUST00000147701.1:82 ENSMUST00000142630.1:226 AK181561:251 AK183793:251 AK203233:251 AK148438:499 |
TATA-Box annotation
| Distance to TSS: | 1333 |
|---|---|
| Nearest PromoterID: | NM_025988 |
| Entrez ID: | 67131 |
| Nearest Unigene: | Mm.390367 |
| Nearest Refseq: | NM_025988 |
| Nearest Ensembl: | ENSMUSG00000056938 |
| Gene Name: | acyl-Coenzyme A binding domain containing 4 |
| Gene Alias: | 2010009P05Rik|2010015A21Rik|AI849317 |
| Gene Description: | acyl-Coenzyme A binding domain containing 4 |
| Gene Type: | protein-coding |
| CpG%: | 0.03 |
| GC%: | 0.522388 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -33(GGGTATAAAAGA,-,0.00) |
