Difference between revisions of "TSS:Hg 107643.1"
From referenceTSS
| Line 2: | Line 2: | ||
|PTPE= | |PTPE= | ||
|R-PTP-EPSILON= | |R-PTP-EPSILON= | ||
| − | |all_trans=NM_001316677:0 AK291828:0 AK300613:0 AK299498:26 ENST00000471218.5 | + | |all_trans=NM_001316677:0 AK291828:0 AK300613:0 AK299498:26 ENST00000471218.5:57 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.02 | |cpg_percent=0.02 | ||
| Line 11: | Line 11: | ||
|entrez_id=5791 | |entrez_id=5791 | ||
|gc_percent=0.457711 | |gc_percent=0.457711 | ||
| − | |gene_alias=HPTPE | + | |gene_alias=HPTPE{{!}}PTPE{{!}}R-PTP-EPSILON |
| − | |gene_description= | + | |gene_description=protein tyrosine phosphatase receptor type E |
|gene_id=5791 | |gene_id=5791 | ||
| − | |gene_name= | + | |gene_name=protein tyrosine phosphatase receptor type E |
|gene_source=HGNC:9669 | |gene_source=HGNC:9669 | ||
|gene_symbol=PTPRE | |gene_symbol=PTPRE | ||
| Line 24: | Line 24: | ||
|nearest_refseq=NM_006504 | |nearest_refseq=NM_006504 | ||
|nearest_unigene=Hs.127022 | |nearest_unigene=Hs.127022 | ||
| − | |num_trans= | + | |num_trans=5 |
|species=human | |species=human | ||
|start=127987272 | |start=127987272 | ||
|start_of_center_position=127987279 | |start_of_center_position=127987279 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-33(TCCTATATAAAC,-,0.00) |
|transcript_name=NM_001316677 AK291828 AK300613 | |transcript_name=NM_001316677 AK291828 AK300613 | ||
|tss_classification=yes | |tss_classification=yes | ||
Revision as of 19:05, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 127987279 |
|---|---|
| End of the center position in the TSS region: | 127987280 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | NM_001316677 AK291828 AK300613 |
|---|---|
| Distance: | 0 |
| Num_trans: | 5 |
| All_trans: | NM_001316677:0 AK291828:0 AK300613:0 AK299498:26 ENST00000471218.5:57 |
TATA-Box annotation
| Distance to TSS: | 0 |
|---|---|
| Nearest PromoterID: | NM_001316677 |
| Entrez ID: | 5791 |
| Nearest Unigene: | Hs.127022 |
| Nearest Refseq: | NM_006504 |
| Nearest Ensembl: | ENSG00000132334 |
| Gene Name: | protein tyrosine phosphatase receptor type E |
| Gene Alias: | HPTPE|PTPE|R-PTP-EPSILON |
| Gene Description: | protein tyrosine phosphatase receptor type E |
| Gene Type: | protein-coding |
| CpG%: | 0.02 |
| GC%: | 0.457711 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -33(TCCTATATAAAC,-,0.00) |
