Difference between revisions of "TSS:Hg 107653.1"
From referenceTSS
| Line 2: | Line 2: | ||
|PTPE= | |PTPE= | ||
|R-PTP-EPSILON= | |R-PTP-EPSILON= | ||
| − | |all_trans=ENST00000479896 | + | |all_trans=ENST00000479896.1:0 AJ430580:0 AJ315969:0 ENST00000495530.5:-1 ENST00000487428.1:-11 U36623:-17 AK290414:-17 NM_001323357:-18 NM_130435:-18 BC071573:-19 ENST00000306042.9:-60 BX648180:-87 ENST00000467366.1:-224 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.035 | |cpg_percent=0.035 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=23 |
|end=128047641 | |end=128047641 | ||
|end_of_center_position=128047636 | |end_of_center_position=128047636 | ||
|entrez_id=5791 | |entrez_id=5791 | ||
|gc_percent=0.621891 | |gc_percent=0.621891 | ||
| − | |gene_alias=HPTPE | + | |gene_alias=HPTPE{{!}}PTPE{{!}}R-PTP-EPSILON |
| − | |gene_description= | + | |gene_description=protein tyrosine phosphatase receptor type E |
|gene_id=5791 | |gene_id=5791 | ||
| − | |gene_name= | + | |gene_name=protein tyrosine phosphatase receptor type E |
|gene_source=HGNC:9669 | |gene_source=HGNC:9669 | ||
|gene_symbol=PTPRE | |gene_symbol=PTPRE | ||
| Line 24: | Line 24: | ||
|nearest_refseq=NM_006504 | |nearest_refseq=NM_006504 | ||
|nearest_unigene=Hs.127022 | |nearest_unigene=Hs.127022 | ||
| − | |num_trans= | + | |num_trans=13 |
|species=human | |species=human | ||
|start=128047629 | |start=128047629 | ||
|start_of_center_position=128047635 | |start_of_center_position=128047635 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000479896 | + | |transcript_name=ENST00000479896.1 AJ430580 AJ315969 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_107653.1 | |tss_id=hg_107653.1 | ||
Revision as of 19:06, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 128047635 |
|---|---|
| End of the center position in the TSS region: | 128047636 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000479896.1 AJ430580 AJ315969 |
|---|---|
| Distance: | 0 |
| Num_trans: | 13 |
| All_trans: | ENST00000479896.1:0 AJ430580:0 AJ315969:0 ENST00000495530.5:-1 ENST00000487428.1:-11 U36623:-17 AK290414:-17 NM_001323357:-18 NM_130435:-18 BC071573:-19 ENST00000306042.9:-60 BX648180:-87 ENST00000467366.1:-224 |
TATA-Box annotation
| Distance to TSS: | 23 |
|---|---|
| Nearest PromoterID: | NM_001323357 |
| Entrez ID: | 5791 |
| Nearest Unigene: | Hs.127022 |
| Nearest Refseq: | NM_006504 |
| Nearest Ensembl: | ENSG00000132334 |
| Gene Name: | protein tyrosine phosphatase receptor type E |
| Gene Alias: | HPTPE|PTPE|R-PTP-EPSILON |
| Gene Description: | protein tyrosine phosphatase receptor type E |
| Gene Type: | protein-coding |
| CpG%: | 0.035 |
| GC%: | 0.621891 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
