Difference between revisions of "TSS:Mm 99579.1"
From referenceTSS
| Line 3: | Line 3: | ||
|Mtapt= | |Mtapt= | ||
|Tau= | |Tau= | ||
| − | |all_trans= | + | |all_trans=NM_001285455:-7 NM_001285454:-7 NM_001285456:-7 NM_010838:-7 NM_001038609:-7 M18775:-7 M18776:-7 AK078167:10 ENSMUST00000138384.7:26 AK038797:26 AK147636:27 ENSMUST00000145227.7:31 BC014748:45 ENSMUST00000106992.9:-53 ENSMUST00000106993.9:62 U12914:99 U12915:99 U12916:99 ENSMUST00000132977.7:120 ENSMUST00000146353.1:126 ENSMUST00000132245.7:128 ENSMUST00000100347.10:131 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.135 | |cpg_percent=0.135 | ||
| Line 12: | Line 12: | ||
|entrez_id=17762 | |entrez_id=17762 | ||
|gc_percent=0.771144 | |gc_percent=0.771144 | ||
| − | |gene_alias=AI413597 | + | |gene_alias=AI413597{{!}}AW045860{{!}}Mtapt{{!}}Tau |
|gene_description=microtubule-associated protein tau | |gene_description=microtubule-associated protein tau | ||
|gene_id=17762 | |gene_id=17762 | ||
| Line 22: | Line 22: | ||
|hgnc_mgi_id=MGI:97180 | |hgnc_mgi_id=MGI:97180 | ||
|nearest_ensembl=ENSMUSG00000018411 | |nearest_ensembl=ENSMUSG00000018411 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001285456 |
|nearest_refseq=NM_010838 | |nearest_refseq=NM_010838 | ||
|nearest_unigene=Mm.1287 | |nearest_unigene=Mm.1287 | ||
| − | |num_trans= | + | |num_trans=22 |
|species=mouse | |species=mouse | ||
|start=104231442 | |start=104231442 | ||
|start_of_center_position=104231447 | |start_of_center_position=104231447 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=NM_001285455 NM_001285454 NM_001285456 NM_010838 NM_001038609 M18775 M18776 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_99579.1 | |tss_id=mm_99579.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=P10637 Q3UH19 Q8C5K4 |
}} | }} | ||
Revision as of 03:54, 22 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 104231447 |
|---|---|
| End of the center position in the TSS region: | 104231448 |
Gene and protein annotation
|
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Transcript annotation
| Transcript_name: | NM_001285455 NM_001285454 NM_001285456 NM_010838 NM_001038609 M18775 M18776 |
|---|---|
| Distance: | -7 |
| Num_trans: | 22 |
| All_trans: | NM_001285455:-7 NM_001285454:-7 NM_001285456:-7 NM_010838:-7 NM_001038609:-7 M18775:-7 M18776:-7 AK078167:10 ENSMUST00000138384.7:26 AK038797:26 AK147636:27 ENSMUST00000145227.7:31 BC014748:45 ENSMUST00000106992.9:-53 ENSMUST00000106993.9:62 U12914:99 U12915:99 U12916:99 ENSMUST00000132977.7:120 ENSMUST00000146353.1:126 ENSMUST00000132245.7:128 ENSMUST00000100347.10:131 |
TATA-Box annotation
| Distance to TSS: | 12 |
|---|---|
| Nearest PromoterID: | NM_001285456 |
| Entrez ID: | 17762 |
| Nearest Unigene: | Mm.1287 |
| Nearest Refseq: | NM_010838 |
| Nearest Ensembl: | ENSMUSG00000018411 |
| Gene Name: | microtubule-associated protein tau |
| Gene Alias: | AI413597|AW045860|Mtapt|Tau |
| Gene Description: | microtubule-associated protein tau |
| Gene Type: | protein-coding |
| CpG%: | 0.135 |
| GC%: | 0.771144 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
