Difference between revisions of "TSS:Mm 99640.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENSMUST00000126931.1:490 AK054150:490 ENSMUST00000100335.9:493 NM_008626 | + | |all_trans=LF203936:0 MA439513:0 LF203090:0 MA438667:0 LF198941:489 MA434518:489 ENSMUST00000126931.1:490 AK054150:490 ENSMUST00000100335.9:493 NM_008626:493 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.04 | |cpg_percent=0.04 | ||
| − | |distance= | + | |distance=0 |
|distance_to_tss=-514 | |distance_to_tss=-514 | ||
|end=105292153 | |end=105292153 | ||
| Line 9: | Line 9: | ||
|entrez_id=17534 | |entrez_id=17534 | ||
|gc_percent=0.621891 | |gc_percent=0.621891 | ||
| − | |gene_alias=Endo180 | + | |gene_alias=Endo180{{!}}mKIAA0709{{!}}uPARAP |
| − | |gene_description= | + | |gene_description=mannose receptor, C type 2 |
|gene_id=17534 | |gene_id=17534 | ||
| − | |gene_name= | + | |gene_name=Mrc2 |
|gene_source=MGI:107818 | |gene_source=MGI:107818 | ||
|gene_symbol=Mrc2 | |gene_symbol=Mrc2 | ||
| Line 23: | Line 23: | ||
|nearest_refseq=NM_008626 | |nearest_refseq=NM_008626 | ||
|nearest_unigene=Mm.235616 | |nearest_unigene=Mm.235616 | ||
| − | |num_trans= | + | |num_trans=10 |
|species=mouse | |species=mouse | ||
|start=105292111 | |start=105292111 | ||
|start_of_center_position=105292132 | |start_of_center_position=105292132 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=LF203936 MA439513 LF203090 MA438667 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_99640.1 | |tss_id=mm_99640.1 | ||
Latest revision as of 03:56, 22 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 105292132 |
|---|---|
| End of the center position in the TSS region: | 105292133 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | LF203936 MA439513 LF203090 MA438667 |
|---|---|
| Distance: | 0 |
| Num_trans: | 10 |
| All_trans: | LF203936:0 MA439513:0 LF203090:0 MA438667:0 LF198941:489 MA434518:489 ENSMUST00000126931.1:490 AK054150:490 ENSMUST00000100335.9:493 NM_008626:493 |
TATA-Box annotation
| Distance to TSS: | -514 |
|---|---|
| Nearest PromoterID: | NM_008626 |
| Entrez ID: | 17534 |
| Nearest Unigene: | Mm.235616 |
| Nearest Refseq: | NM_008626 |
| Nearest Ensembl: | ENSMUSG00000020695 |
| Gene Name: | Mrc2 |
| Gene Alias: | Endo180|mKIAA0709|uPARAP |
| Gene Description: | mannose receptor, C type 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.04 |
| GC%: | 0.621891 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
