Difference between revisions of "TSS:Mm 99684.1"
From referenceTSS
| Line 4: | Line 4: | ||
|HAN11= | |HAN11= | ||
|Wdr68= | |Wdr68= | ||
| − | |all_trans=ENSMUST00000058438.8:6 NM_027946 | + | |all_trans=LF198943:5 MA434520:5 ENSMUST00000058438.8:6 NM_027946:6 AK047435:6 AK005902:13 AK165674:18 AK154757:18 ENSMUST00000106891.1:34 AK080823:34 AK137813:43 BC048722:87 BC048165:90 LF231065:233 MA466642:233 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.115 | |cpg_percent=0.115 | ||
| − | |distance= | + | |distance=5 |
|distance_to_tss=-10 | |distance_to_tss=-10 | ||
|end=106036866 | |end=106036866 | ||
| Line 13: | Line 13: | ||
|entrez_id=71833 | |entrez_id=71833 | ||
|gc_percent=0.636816 | |gc_percent=0.636816 | ||
| − | |gene_alias=1700012F10Rik | + | |gene_alias=1700012F10Rik{{!}}2610037L01Rik{{!}}C86529{{!}}HAN11{{!}}Wdr68 |
|gene_description=DDB1 and CUL4 associated factor 7 | |gene_description=DDB1 and CUL4 associated factor 7 | ||
|gene_id=71833 | |gene_id=71833 | ||
| − | |gene_name= | + | |gene_name=Dcaf7 |
|gene_source=MGI:1919083 | |gene_source=MGI:1919083 | ||
|gene_symbol=Dcaf7 | |gene_symbol=Dcaf7 | ||
| Line 26: | Line 26: | ||
|nearest_refseq=NM_027946 | |nearest_refseq=NM_027946 | ||
|nearest_unigene=Mm.307455 | |nearest_unigene=Mm.307455 | ||
| − | |num_trans= | + | |num_trans=15 |
|species=mouse | |species=mouse | ||
|start=106036857 | |start=106036857 | ||
|start_of_center_position=106036861 | |start_of_center_position=106036861 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=LF198943 MA434520 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_99684.1 | |tss_id=mm_99684.1 | ||
Latest revision as of 03:57, 22 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 106036861 |
|---|---|
| End of the center position in the TSS region: | 106036862 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LF198943 MA434520 |
|---|---|
| Distance: | 5 |
| Num_trans: | 15 |
| All_trans: | LF198943:5 MA434520:5 ENSMUST00000058438.8:6 NM_027946:6 AK047435:6 AK005902:13 AK165674:18 AK154757:18 ENSMUST00000106891.1:34 AK080823:34 AK137813:43 BC048722:87 BC048165:90 LF231065:233 MA466642:233 |
TATA-Box annotation
| Distance to TSS: | -10 |
|---|---|
| Nearest PromoterID: | NM_027946 |
| Entrez ID: | 71833 |
| Nearest Unigene: | Mm.307455 |
| Nearest Refseq: | NM_027946 |
| Nearest Ensembl: | ENSMUSG00000049354 |
| Gene Name: | Dcaf7 |
| Gene Alias: | 1700012F10Rik|2610037L01Rik|C86529|HAN11|Wdr68 |
| Gene Description: | DDB1 and CUL4 associated factor 7 |
| Gene Type: | protein-coding |
| CpG%: | 0.115 |
| GC%: | 0.636816 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
