Difference between revisions of "TSS:Hg 112295.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000528542.6 | + | |all_trans=ENST00000528542.6:0 BC073821:17 LF370581:226 MA606158:226 ENST00000530183.1:-258 ENST00000534606.1:-274 ENST00000527089.5:-306 ENST00000525077.2:318 NM_001286606:318 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.065 | |cpg_percent=0.065 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss=- | + | |distance_to_tss=-342 |
|end=827601 | |end=827601 | ||
|end_of_center_position=827578 | |end_of_center_position=827578 | ||
| Line 19: | Line 19: | ||
|hgnc_mgi_id=HGNC:28703 | |hgnc_mgi_id=HGNC:28703 | ||
|nearest_ensembl=ENSG00000177685 | |nearest_ensembl=ENSG00000177685 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001286606 |
|nearest_refseq=NM_173584 | |nearest_refseq=NM_173584 | ||
|nearest_unigene=Hs.660936 | |nearest_unigene=Hs.660936 | ||
| Line 27: | Line 27: | ||
|start_of_center_position=827577 | |start_of_center_position=827577 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000528542.6 | + | |transcript_name=ENST00000528542.6 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_112295.1 | |tss_id=hg_112295.1 | ||
Revision as of 20:53, 15 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 827577 |
|---|---|
| End of the center position in the TSS region: | 827578 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000528542.6 |
|---|---|
| Distance: | 0 |
| Num_trans: | 9 |
| All_trans: | ENST00000528542.6:0 BC073821:17 LF370581:226 MA606158:226 ENST00000530183.1:-258 ENST00000534606.1:-274 ENST00000527089.5:-306 ENST00000525077.2:318 NM_001286606:318 |
TATA-Box annotation
| Distance to TSS: | -342 |
|---|---|
| Nearest PromoterID: | NM_001286606 |
| Entrez ID: | 283229 |
| Nearest Unigene: | Hs.660936 |
| Nearest Refseq: | NM_173584 |
| Nearest Ensembl: | ENSG00000177685 |
| Gene Name: | calcium release activated channel regulator 2B |
| Gene Alias: | EFCAB4A |
| Gene Description: | calcium release activated channel regulator 2B |
| Gene Type: | protein-coding |
| CpG%: | 0.065 |
| GC%: | 0.721393 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
