Difference between revisions of "TSS:Hg 117850.1"
From referenceTSS
| Line 2: | Line 2: | ||
|SI-CLP= | |SI-CLP= | ||
|SICLP= | |SICLP= | ||
| − | |all_trans=ENST00000429789.6:0 ENST00000528581.5:0 ENST00000436108.6:0 ENST00000530939.5:0 ENST00000525225.1:0 | + | |all_trans=ENST00000323578.13:0 ENST00000429789.6:0 ENST00000528581.5:0 ENST00000436108.6:0 ENST00000530939.5:0 ENST00000525225.1:0 NM_001142676:0 NM_023947:0 NM_001142677:0 NM_001142674:0 BC095409:0 AK027711:0 AF212229:0 AY037151:0 AK075413:0 AK225025:0 AK297743:0 BC000001:3 AK225398:4 ENST00000528426.5:6 LF384315:-27 MA619892:-27 LF370607:147 MA606184:147 LF370605:357 MA606182:357 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.125 | |cpg_percent=0.125 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=-12 |
|end=910847 | |end=910847 | ||
|end_of_center_position=910822 | |end_of_center_position=910822 | ||
|entrez_id=66005 | |entrez_id=66005 | ||
|gc_percent=0.751244 | |gc_percent=0.751244 | ||
| − | |gene_alias=GL008 | + | |gene_alias=GL008{{!}}SI-CLP{{!}}SICLP |
|gene_description=chitinase domain containing 1 | |gene_description=chitinase domain containing 1 | ||
|gene_id=66005 | |gene_id=66005 | ||
| Line 17: | Line 17: | ||
|gene_source=HGNC:28474 | |gene_source=HGNC:28474 | ||
|gene_symbol=CHID1 | |gene_symbol=CHID1 | ||
| − | |gene_synonyms=FLJ42707 MGC3234 | + | |gene_synonyms=FLJ42707 MGC3234 SI-CLP |
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:28474 | |hgnc_mgi_id=HGNC:28474 | ||
|nearest_ensembl=ENSG00000177830 | |nearest_ensembl=ENSG00000177830 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001142676 |
|nearest_refseq=NM_023947 | |nearest_refseq=NM_023947 | ||
|nearest_unigene=Hs.144468 | |nearest_unigene=Hs.144468 | ||
| − | |num_trans= | + | |num_trans=26 |
|species=human | |species=human | ||
|start=910796 | |start=910796 | ||
|start_of_center_position=910821 | |start_of_center_position=910821 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000429789.6 ENST00000528581.5 ENST00000436108.6 ENST00000530939.5 ENST00000525225.1 | + | |transcript_name=ENST00000323578.13 ENST00000429789.6 ENST00000528581.5 ENST00000436108.6 ENST00000530939.5 ENST00000525225.1 NM_001142676 NM_023947 NM_001142677 NM_001142674 BC095409 AK027711 AF212229 AY037151 AK075413 AK225025 AK297743 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_117850.1 | |tss_id=hg_117850.1 | ||
Revision as of 23:01, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 910821 |
|---|---|
| End of the center position in the TSS region: | 910822 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000323578.13 ENST00000429789.6 ENST00000528581.5 ENST00000436108.6 ENST00000530939.5 ENST00000525225.1 NM_001142676 NM_023947 NM_001142677 NM_001142674 BC095409 AK027711 AF212229 AY037151 AK075413 AK225025 AK297743 |
|---|---|
| Distance: | 0 |
| Num_trans: | 26 |
| All_trans: | ENST00000323578.13:0 ENST00000429789.6:0 ENST00000528581.5:0 ENST00000436108.6:0 ENST00000530939.5:0 ENST00000525225.1:0 NM_001142676:0 NM_023947:0 NM_001142677:0 NM_001142674:0 BC095409:0 AK027711:0 AF212229:0 AY037151:0 AK075413:0 AK225025:0 AK297743:0 BC000001:3 AK225398:4 ENST00000528426.5:6 LF384315:-27 MA619892:-27 LF370607:147 MA606184:147 LF370605:357 MA606182:357 |
TATA-Box annotation
| Distance to TSS: | -12 |
|---|---|
| Nearest PromoterID: | NM_001142676 |
| Entrez ID: | 66005 |
| Nearest Unigene: | Hs.144468 |
| Nearest Refseq: | NM_023947 |
| Nearest Ensembl: | ENSG00000177830 |
| Gene Name: | chitinase domain containing 1 |
| Gene Alias: | GL008|SI-CLP|SICLP |
| Gene Description: | chitinase domain containing 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.125 |
| GC%: | 0.751244 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
