Difference between revisions of "TSS:Mm 168321.1"
From referenceTSS
| Line 3: | Line 3: | ||
|Ts= | |Ts= | ||
|Tss= | |Tss= | ||
| − | |all_trans=ENSMUST00000082092.4:-16 BC047046:-25 ENSMUST00000106599.7:-33 AK010277:-35 AK151517:-35 BC034339:-38 AK010518:-51 AK012391:-51 BC055346:-51 | + | |all_trans=ENSMUST00000082092.4:-16 BC047046:-25 ENSMUST00000106599.7:-33 AK010277:-35 AK151517:-35 BC034339:-38 AK010518:-51 AK012391:-51 BC055346:-51 NM_001048058:-62 NM_001048057:-62 NM_001362918:-62 NM_023372:-62 AK002659:-64 ENSMUST00000077915.9:-94 ENSMUST00000106602.9:-118 AB037665:-118 BC094258:139 BC094644:139 BC081447:155 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.105 | |cpg_percent=0.105 | ||
|distance=-16 | |distance=-16 | ||
| − | |distance_to_tss= | + | |distance_to_tss=62 |
|end=114668642 | |end=114668642 | ||
|end_of_center_position=114668642 | |end_of_center_position=114668642 | ||
|entrez_id=67671 | |entrez_id=67671 | ||
|gc_percent=0.681592 | |gc_percent=0.681592 | ||
| − | |gene_alias=0610025G13Rik | + | |gene_alias=0610025G13Rik{{!}}Rbt{{!}}Ts{{!}}Tss |
|gene_description=ribosomal protein L38 | |gene_description=ribosomal protein L38 | ||
|gene_id=67671 | |gene_id=67671 | ||
| Line 22: | Line 22: | ||
|hgnc_mgi_id=MGI:1914921 | |hgnc_mgi_id=MGI:1914921 | ||
|nearest_ensembl=ENSMUSG00000057322 | |nearest_ensembl=ENSMUSG00000057322 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001048058 |
|nearest_refseq=NM_023372 | |nearest_refseq=NM_023372 | ||
|nearest_unigene=Mm.238817 | |nearest_unigene=Mm.238817 | ||
| − | |num_trans= | + | |num_trans=20 |
|species=mouse | |species=mouse | ||
|start=114668641 | |start=114668641 | ||
Revision as of 18:37, 20 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 114668641 |
|---|---|
| End of the center position in the TSS region: | 114668642 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENSMUST00000082092.4 |
|---|---|
| Distance: | -16 |
| Num_trans: | 20 |
| All_trans: | ENSMUST00000082092.4:-16 BC047046:-25 ENSMUST00000106599.7:-33 AK010277:-35 AK151517:-35 BC034339:-38 AK010518:-51 AK012391:-51 BC055346:-51 NM_001048058:-62 NM_001048057:-62 NM_001362918:-62 NM_023372:-62 AK002659:-64 ENSMUST00000077915.9:-94 ENSMUST00000106602.9:-118 AB037665:-118 BC094258:139 BC094644:139 BC081447:155 |
TATA-Box annotation
| Distance to TSS: | 62 |
|---|---|
| Nearest PromoterID: | NM_001048058 |
| Entrez ID: | 67671 |
| Nearest Unigene: | Mm.238817 |
| Nearest Refseq: | NM_023372 |
| Nearest Ensembl: | ENSMUSG00000057322 |
| Gene Name: | ribosomal protein L38 |
| Gene Alias: | 0610025G13Rik|Rbt|Ts|Tss |
| Gene Description: | ribosomal protein L38 |
| Gene Type: | protein-coding |
| CpG%: | 0.105 |
| GC%: | 0.681592 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
