Difference between revisions of "TSS:Hg 118100.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=AK123560:32 BC009853:40 ENST00000436715.5:62 | + | |all_trans=LC106311:-9 AK123560:32 BC009853:40 LF370707:41 MA606284:41 ENST00000436715.5:62 BC013067:-66 ENST00000417089.6:-101 LF370708:-136 MA606285:-136 MB407720:-148 AB372813:-148 LF160018:-148 LP726824:-148 LP819094:-148 LP939036:-148 LQ072819:-148 LQ441148:-148 LX280753:-148 LY405562:-148 LZ234371:-148 MA260801:-148 MA646320:-148 MA734204:-148 MS833933:-148 MS834818:-148 MA803373:-148 MB406830:-148 ENST00000447298.2:166 LF160208:-183 LP727120:-183 LP819390:-183 LP939332:-183 LQ072820:-183 LQ441143:-183 LQ673013:-183 LY405561:-183 LY496320:-183 LY496766:-183 LY497013:-183 LY497420:-183 LY497638:-183 LY498022:-183 LZ234253:-183 LZ238499:-183 LZ239038:-183 MA260800:-183 MA405867:-183 MA646321:-183 MA734205:-183 MS833934:-183 MS884200:-183 MS884607:-183 MS902101:-183 MS994328:-183 MS994774:-183 MS996704:-183 MS997088:-183 MA803374:-183 MA805853:-183 MA806405:-183 MA822458:-183 LY616263:-183 LY616802:-183 LG052084:-192 LY496531:-192 LY497206:-192 LY497818:-192 LZ238758:-192 MS884393:-192 MS994539:-192 MS996884:-192 MA806128:-192 MA822797:-192 LY616522:-192 MB407223:-192 LF370706:215 MA606283:215 ENST00000431095.7:353 LF370709:-394 MA606286:-394 ENST00000442037.5:442 BC006831:-466 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.1 | |cpg_percent=0.1 | ||
| − | |distance= | + | |distance=-9 |
|distance_to_tss=195 | |distance_to_tss=195 | ||
|end=1996639 | |end=1996639 | ||
| Line 9: | Line 9: | ||
|entrez_id=100033819 | |entrez_id=100033819 | ||
|gc_percent=0.731343 | |gc_percent=0.731343 | ||
| − | |gene_alias=MIRN675 | + | |gene_alias=MIRN675{{!}}hsa-mir-675 |
|gene_description=microRNA 675 | |gene_description=microRNA 675 | ||
|gene_id=283120 | |gene_id=283120 | ||
| − | |gene_name= | + | |gene_name=H19 imprinted maternally expressed transcript |
|gene_source=HGNC:4713 | |gene_source=HGNC:4713 | ||
|gene_symbol=H19 | |gene_symbol=H19 | ||
| − | |gene_synonyms=ASM ASM1 D11S813E LINC00008 NCRNA00008 | + | |gene_synonyms=ASM ASM1 D11S813E LINC00008 MIR675HG NCRNA00008 |
|gene_type=ncRNA | |gene_type=ncRNA | ||
|hgnc_mgi_id=HGNC:4713 | |hgnc_mgi_id=HGNC:4713 | ||
|hsa-mir-675= | |hsa-mir-675= | ||
| − | |nearest_ensembl= | + | |nearest_ensembl=ENSG00000284010 |
|nearest_promoter_id=NR_030533 | |nearest_promoter_id=NR_030533 | ||
|nearest_refseq=NR_030533 | |nearest_refseq=NR_030533 | ||
|nearest_unigene= | |nearest_unigene= | ||
| − | |num_trans= | + | |num_trans=83 |
|species=human | |species=human | ||
|start=1996632 | |start=1996632 | ||
|start_of_center_position=1996635 | |start_of_center_position=1996635 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=LC106311 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_118100.1 | |tss_id=hg_118100.1 | ||
Revision as of 23:07, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 1996635 |
|---|---|
| End of the center position in the TSS region: | 1996636 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LC106311 |
|---|---|
| Distance: | -9 |
| Num_trans: | 83 |
| All_trans: | LC106311:-9 AK123560:32 BC009853:40 LF370707:41 MA606284:41 ENST00000436715.5:62 BC013067:-66 ENST00000417089.6:-101 LF370708:-136 MA606285:-136 MB407720:-148 AB372813:-148 LF160018:-148 LP726824:-148 LP819094:-148 LP939036:-148 LQ072819:-148 LQ441148:-148 LX280753:-148 LY405562:-148 LZ234371:-148 MA260801:-148 MA646320:-148 MA734204:-148 MS833933:-148 MS834818:-148 MA803373:-148 MB406830:-148 ENST00000447298.2:166 LF160208:-183 LP727120:-183 LP819390:-183 LP939332:-183 LQ072820:-183 LQ441143:-183 LQ673013:-183 LY405561:-183 LY496320:-183 LY496766:-183 LY497013:-183 LY497420:-183 LY497638:-183 LY498022:-183 LZ234253:-183 LZ238499:-183 LZ239038:-183 MA260800:-183 MA405867:-183 MA646321:-183 MA734205:-183 MS833934:-183 MS884200:-183 MS884607:-183 MS902101:-183 MS994328:-183 MS994774:-183 MS996704:-183 MS997088:-183 MA803374:-183 MA805853:-183 MA806405:-183 MA822458:-183 LY616263:-183 LY616802:-183 LG052084:-192 LY496531:-192 LY497206:-192 LY497818:-192 LZ238758:-192 MS884393:-192 MS994539:-192 MS996884:-192 MA806128:-192 MA822797:-192 LY616522:-192 MB407223:-192 LF370706:215 MA606283:215 ENST00000431095.7:353 LF370709:-394 MA606286:-394 ENST00000442037.5:442 BC006831:-466 |
TATA-Box annotation
| Distance to TSS: | 195 |
|---|---|
| Nearest PromoterID: | NR_030533 |
| Entrez ID: | 100033819 |
| Nearest Unigene: | |
| Nearest Refseq: | NR_030533 |
| Nearest Ensembl: | ENSG00000284010 |
| Gene Name: | H19 imprinted maternally expressed transcript |
| Gene Alias: | MIRN675|hsa-mir-675 |
| Gene Description: | microRNA 675 |
| Gene Type: | ncRNA |
| CpG%: | 0.1 |
| GC%: | 0.731343 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
