Difference between revisions of "TSS:Hg 118109.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=BC023213:-9 BC053637:11 BC007513:25 ENST00000411861.5 | + | |all_trans=BC023213:-9 BC053637:11 LF370711:21 MA606288:21 BC007513:25 ENST00000411861.5:-39 BC063626:-39 BC098439:-57 BC063564:-59 BC006831:65 LF370712:-68 MA606289:-68 BC069247:-85 LF370709:137 MA606286:137 LF370714:-137 MA606291:-137 BC015952:-179 ENST00000439725.5:-282 LF370715:-291 MA606292:-291 BC053636:-296 BC110657:-296 BC115700:-325 LG052084:339 LY496531:339 LY497206:339 LY497818:339 LZ238758:339 MS884393:339 MS994539:339 MS996884:339 MA806128:339 MA822797:339 LY616522:339 MB407223:339 LF160208:348 LP727120:348 LP819390:348 LP939332:348 LQ072820:348 LQ441143:348 LQ673013:348 LY405561:348 LY496320:348 LY496766:348 LY497013:348 LY497420:348 LY497638:348 LY498022:348 LZ234253:348 LZ238499:348 LZ239038:348 MA260800:348 MA405867:348 MA646321:348 MA734205:348 MS833934:348 MS884200:348 MS884607:348 MS902101:348 MS994328:348 MS994774:348 MS996704:348 MS997088:348 MA803374:348 MA805853:348 MA806405:348 MA822458:348 LY616263:348 LY616802:348 MB407720:383 AB372813:383 LF160018:383 LP726824:383 LP819094:383 LP939036:383 LQ072819:383 LQ441148:383 LX280753:383 LY405562:383 LZ234371:383 MA260801:383 MA646320:383 MA734204:383 MS833933:383 MS834818:383 MA803373:383 MB406830:383 LF370708:395 MA606285:395 LF370717:-411 MA606294:-411 ENST00000417089.6:430 BC013067:465 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.03 | |cpg_percent=0.03 | ||
| Line 9: | Line 9: | ||
|entrez_id=100033819 | |entrez_id=100033819 | ||
|gc_percent=0.656716 | |gc_percent=0.656716 | ||
| − | |gene_alias=MIRN675 | + | |gene_alias=MIRN675{{!}}hsa-mir-675 |
|gene_description=microRNA 675 | |gene_description=microRNA 675 | ||
|gene_id=283120 | |gene_id=283120 | ||
| − | |gene_name= | + | |gene_name=H19 imprinted maternally expressed transcript |
|gene_source=HGNC:4713 | |gene_source=HGNC:4713 | ||
|gene_symbol=H19 | |gene_symbol=H19 | ||
| − | |gene_synonyms=ASM ASM1 D11S813E LINC00008 NCRNA00008 | + | |gene_synonyms=ASM ASM1 D11S813E LINC00008 MIR675HG NCRNA00008 |
|gene_type=ncRNA | |gene_type=ncRNA | ||
|hgnc_mgi_id=HGNC:4713 | |hgnc_mgi_id=HGNC:4713 | ||
|hsa-mir-675= | |hsa-mir-675= | ||
| − | |nearest_ensembl= | + | |nearest_ensembl=ENSG00000284010 |
|nearest_promoter_id=NR_030533 | |nearest_promoter_id=NR_030533 | ||
|nearest_refseq=NR_030533 | |nearest_refseq=NR_030533 | ||
|nearest_unigene= | |nearest_unigene= | ||
| − | |num_trans= | + | |num_trans=95 |
|species=human | |species=human | ||
|start=1997169 | |start=1997169 | ||
Revision as of 23:08, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 1997173 |
|---|---|
| End of the center position in the TSS region: | 1997174 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | BC023213 |
|---|---|
| Distance: | -9 |
| Num_trans: | 95 |
| All_trans: | BC023213:-9 BC053637:11 LF370711:21 MA606288:21 BC007513:25 ENST00000411861.5:-39 BC063626:-39 BC098439:-57 BC063564:-59 BC006831:65 LF370712:-68 MA606289:-68 BC069247:-85 LF370709:137 MA606286:137 LF370714:-137 MA606291:-137 BC015952:-179 ENST00000439725.5:-282 LF370715:-291 MA606292:-291 BC053636:-296 BC110657:-296 BC115700:-325 LG052084:339 LY496531:339 LY497206:339 LY497818:339 LZ238758:339 MS884393:339 MS994539:339 MS996884:339 MA806128:339 MA822797:339 LY616522:339 MB407223:339 LF160208:348 LP727120:348 LP819390:348 LP939332:348 LQ072820:348 LQ441143:348 LQ673013:348 LY405561:348 LY496320:348 LY496766:348 LY497013:348 LY497420:348 LY497638:348 LY498022:348 LZ234253:348 LZ238499:348 LZ239038:348 MA260800:348 MA405867:348 MA646321:348 MA734205:348 MS833934:348 MS884200:348 MS884607:348 MS902101:348 MS994328:348 MS994774:348 MS996704:348 MS997088:348 MA803374:348 MA805853:348 MA806405:348 MA822458:348 LY616263:348 LY616802:348 MB407720:383 AB372813:383 LF160018:383 LP726824:383 LP819094:383 LP939036:383 LQ072819:383 LQ441148:383 LX280753:383 LY405562:383 LZ234371:383 MA260801:383 MA646320:383 MA734204:383 MS833933:383 MS834818:383 MA803373:383 MB406830:383 LF370708:395 MA606285:395 LF370717:-411 MA606294:-411 ENST00000417089.6:430 BC013067:465 |
TATA-Box annotation
| Distance to TSS: | -343 |
|---|---|
| Nearest PromoterID: | NR_030533 |
| Entrez ID: | 100033819 |
| Nearest Unigene: | |
| Nearest Refseq: | NR_030533 |
| Nearest Ensembl: | ENSG00000284010 |
| Gene Name: | H19 imprinted maternally expressed transcript |
| Gene Alias: | MIRN675|hsa-mir-675 |
| Gene Description: | microRNA 675 |
| Gene Type: | ncRNA |
| CpG%: | 0.03 |
| GC%: | 0.656716 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
