Difference between revisions of "TSS:Hg 118112.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=BC015952:-32 BC069247:52 BC063564:78 BC098439:80 ENST00000411861.5 | + | |all_trans=LF370714:0 MA606291:0 BC015952:-32 BC069247:52 LF370712:69 MA606289:69 BC063564:78 BC098439:80 ENST00000411861.5:98 BC063626:98 BC023213:128 ENST00000439725.5:-135 LF370715:-144 MA606292:-144 BC053636:-149 BC110657:-149 BC053637:156 LF370711:166 MA606288:166 BC007513:170 BC115700:-178 BC006831:210 LF370717:-264 MA606294:-264 LF370709:282 MA606286:282 LF370719:-402 MA606296:-402 BC040852:-436 BC040073:-453 LG052084:484 LY496531:484 LY497206:484 LY497818:484 LZ238758:484 MS884393:484 MS994539:484 MS996884:484 MA806128:484 MA822797:484 LY616522:484 MB407223:484 ENST00000412788.5:-489 LF160208:493 LP727120:493 LP819390:493 LP939332:493 LQ072820:493 LQ441143:493 LQ673013:493 LY405561:493 LY496320:493 LY496766:493 LY497013:493 LY497420:493 LY497638:493 LY498022:493 LZ234253:493 LZ238499:493 LZ239038:493 MA260800:493 MA405867:493 MA646321:493 MA734205:493 MS833934:493 MS884200:493 MS884607:493 MS902101:493 MS994328:493 MS994774:493 MS996704:493 MS997088:493 MA803374:493 MA805853:493 MA806405:493 MA822458:493 LY616263:493 LY616802:493 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.035 | |cpg_percent=0.035 | ||
| − | |distance= | + | |distance=0 |
|distance_to_tss=-489 | |distance_to_tss=-489 | ||
|end=1997325 | |end=1997325 | ||
| Line 9: | Line 9: | ||
|entrez_id=100033819 | |entrez_id=100033819 | ||
|gc_percent=0.651741 | |gc_percent=0.651741 | ||
| − | |gene_alias=MIRN675 | + | |gene_alias=MIRN675{{!}}hsa-mir-675 |
|gene_description=microRNA 675 | |gene_description=microRNA 675 | ||
|gene_id=283120 | |gene_id=283120 | ||
| − | |gene_name= | + | |gene_name=MIR675 |
|gene_source=HGNC:4713 | |gene_source=HGNC:4713 | ||
|gene_symbol=H19 | |gene_symbol=H19 | ||
| Line 19: | Line 19: | ||
|hgnc_mgi_id=HGNC:4713 | |hgnc_mgi_id=HGNC:4713 | ||
|hsa-mir-675= | |hsa-mir-675= | ||
| − | |nearest_ensembl= | + | |nearest_ensembl=ENSG00000284010 |
|nearest_promoter_id=NR_030533 | |nearest_promoter_id=NR_030533 | ||
|nearest_refseq=NR_030533 | |nearest_refseq=NR_030533 | ||
|nearest_unigene= | |nearest_unigene= | ||
| − | |num_trans= | + | |num_trans=78 |
|species=human | |species=human | ||
|start=1997314 | |start=1997314 | ||
|start_of_center_position=1997319 | |start_of_center_position=1997319 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=LF370714 MA606291 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_118112.1 | |tss_id=hg_118112.1 | ||
Latest revision as of 23:08, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 1997319 |
|---|---|
| End of the center position in the TSS region: | 1997320 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LF370714 MA606291 |
|---|---|
| Distance: | 0 |
| Num_trans: | 78 |
| All_trans: | LF370714:0 MA606291:0 BC015952:-32 BC069247:52 LF370712:69 MA606289:69 BC063564:78 BC098439:80 ENST00000411861.5:98 BC063626:98 BC023213:128 ENST00000439725.5:-135 LF370715:-144 MA606292:-144 BC053636:-149 BC110657:-149 BC053637:156 LF370711:166 MA606288:166 BC007513:170 BC115700:-178 BC006831:210 LF370717:-264 MA606294:-264 LF370709:282 MA606286:282 LF370719:-402 MA606296:-402 BC040852:-436 BC040073:-453 LG052084:484 LY496531:484 LY497206:484 LY497818:484 LZ238758:484 MS884393:484 MS994539:484 MS996884:484 MA806128:484 MA822797:484 LY616522:484 MB407223:484 ENST00000412788.5:-489 LF160208:493 LP727120:493 LP819390:493 LP939332:493 LQ072820:493 LQ441143:493 LQ673013:493 LY405561:493 LY496320:493 LY496766:493 LY497013:493 LY497420:493 LY497638:493 LY498022:493 LZ234253:493 LZ238499:493 LZ239038:493 MA260800:493 MA405867:493 MA646321:493 MA734205:493 MS833934:493 MS884200:493 MS884607:493 MS902101:493 MS994328:493 MS994774:493 MS996704:493 MS997088:493 MA803374:493 MA805853:493 MA806405:493 MA822458:493 LY616263:493 LY616802:493 |
TATA-Box annotation
| Distance to TSS: | -489 |
|---|---|
| Nearest PromoterID: | NR_030533 |
| Entrez ID: | 100033819 |
| Nearest Unigene: | |
| Nearest Refseq: | NR_030533 |
| Nearest Ensembl: | ENSG00000284010 |
| Gene Name: | MIR675 |
| Gene Alias: | MIRN675|hsa-mir-675 |
| Gene Description: | microRNA 675 |
| Gene Type: | ncRNA |
| CpG%: | 0.035 |
| GC%: | 0.651741 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
