Difference between revisions of "TSS:Hg 118113.1"
From referenceTSS
| Line 6: | Line 6: | ||
|NCRNA00008= | |NCRNA00008= | ||
|WT2= | |WT2= | ||
| − | |all_trans=BC053636:-5 BC110657:-5 ENST00000439725.5 | + | |all_trans=LF370715:0 MA606292:0 BC053636:-5 BC110657:-5 ENST00000439725.5:9 BC115700:-34 BC015952:112 LF370717:-120 MA606294:-120 LF370714:154 MA606291:154 BC069247:206 LF370712:223 MA606289:223 BC063564:232 BC098439:234 ENST00000411861.5:252 BC063626:252 LF370719:-258 MA606296:-258 BC023213:282 BC040852:-292 BC040073:-309 BC053637:310 LF370711:320 MA606288:320 BC007513:324 ENST00000412788.5:-345 BC006831:364 AK056774:-373 AK092486:-373 AK311497:-373 AK309887:-373 LF207984:-376 MA443561:-376 ENST00000414790.6:-406 ENST00000643292.1:-406 NR_002196:-406 NR_131223:-406 LF370709:436 MA606286:436 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.035 | |cpg_percent=0.035 | ||
| − | |distance= | + | |distance=0 |
|distance_to_tss=406 | |distance_to_tss=406 | ||
|end=1997469 | |end=1997469 | ||
| Line 15: | Line 15: | ||
|entrez_id=283120 | |entrez_id=283120 | ||
|gc_percent=0.646766 | |gc_percent=0.646766 | ||
| − | |gene_alias=ASM | + | |gene_alias=ASM{{!}}ASM1{{!}}BWS{{!}}D11S813E{{!}}LINC00008{{!}}MIR675HG{{!}}NCRNA00008{{!}}WT2 |
| − | |gene_description= | + | |gene_description=H19 imprinted maternally expressed transcript |
|gene_id=283120 | |gene_id=283120 | ||
| − | |gene_name= | + | |gene_name=H19 |
|gene_source=HGNC:4713 | |gene_source=HGNC:4713 | ||
|gene_symbol=H19 | |gene_symbol=H19 | ||
| Line 25: | Line 25: | ||
|hgnc_mgi_id=HGNC:4713 | |hgnc_mgi_id=HGNC:4713 | ||
|nearest_ensembl=ENSG00000130600 | |nearest_ensembl=ENSG00000130600 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NR_131223 |
|nearest_refseq=NR_002196 | |nearest_refseq=NR_002196 | ||
|nearest_unigene=Hs.533566 | |nearest_unigene=Hs.533566 | ||
| − | |num_trans= | + | |num_trans=41 |
|species=human | |species=human | ||
|start=1997468 | |start=1997468 | ||
|start_of_center_position=1997468 | |start_of_center_position=1997468 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=LF370715 MA606292 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_118113.1 | |tss_id=hg_118113.1 | ||
Latest revision as of 23:08, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 1997468 |
|---|---|
| End of the center position in the TSS region: | 1997469 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LF370715 MA606292 |
|---|---|
| Distance: | 0 |
| Num_trans: | 41 |
| All_trans: | LF370715:0 MA606292:0 BC053636:-5 BC110657:-5 ENST00000439725.5:9 BC115700:-34 BC015952:112 LF370717:-120 MA606294:-120 LF370714:154 MA606291:154 BC069247:206 LF370712:223 MA606289:223 BC063564:232 BC098439:234 ENST00000411861.5:252 BC063626:252 LF370719:-258 MA606296:-258 BC023213:282 BC040852:-292 BC040073:-309 BC053637:310 LF370711:320 MA606288:320 BC007513:324 ENST00000412788.5:-345 BC006831:364 AK056774:-373 AK092486:-373 AK311497:-373 AK309887:-373 LF207984:-376 MA443561:-376 ENST00000414790.6:-406 ENST00000643292.1:-406 NR_002196:-406 NR_131223:-406 LF370709:436 MA606286:436 |
TATA-Box annotation
| Distance to TSS: | 406 |
|---|---|
| Nearest PromoterID: | NR_131223 |
| Entrez ID: | 283120 |
| Nearest Unigene: | Hs.533566 |
| Nearest Refseq: | NR_002196 |
| Nearest Ensembl: | ENSG00000130600 |
| Gene Name: | H19 |
| Gene Alias: | ASM|ASM1|BWS|D11S813E|LINC00008|MIR675HG|NCRNA00008|WT2 |
| Gene Description: | H19 imprinted maternally expressed transcript |
| Gene Type: | ncRNA |
| CpG%: | 0.035 |
| GC%: | 0.646766 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
