Difference between revisions of "TSS:Hg 232848.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
|HIP3RP= | |HIP3RP= | ||
| + | |all_trans=ENST00000428066.6:236 NR_131224:240 ENST00000422826.2:442 | ||
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.03 | |cpg_percent=0.03 | ||
| − | |distance= | + | |distance=236 |
| − | |distance_to_tss= | + | |distance_to_tss=18389 |
|end=19135566 | |end=19135566 | ||
|end_of_center_position=2001710 | |end_of_center_position=2001710 | ||
|entrez_id=54503 | |entrez_id=54503 | ||
|gc_percent=0.61194 | |gc_percent=0.61194 | ||
| − | |gene_alias=HIP14L | + | |gene_alias=HIP14L{{!}}HIP3RP |
|gene_description=zinc finger DHHC-type containing 13 | |gene_description=zinc finger DHHC-type containing 13 | ||
| − | |gene_name= | + | |gene_id=283120 |
| + | |gene_name=H19 imprinted maternally expressed transcript | ||
| + | |gene_source=HGNC:4713 | ||
| + | |gene_symbol=H19 | ||
| + | |gene_synonyms=ASM ASM1 D11S813E LINC00008 MIR675HG NCRNA00008 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:4713 | ||
|nearest_ensembl=ENSG00000177054 | |nearest_ensembl=ENSG00000177054 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_019028 |
|nearest_refseq=NM_019028 | |nearest_refseq=NM_019028 | ||
|nearest_unigene=Hs.188569 | |nearest_unigene=Hs.188569 | ||
| − | |num_trans= | + | |num_trans=3 |
|species=human | |species=human | ||
|start=19135547 | |start=19135547 | ||
|start_of_center_position=2001709 | |start_of_center_position=2001709 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=ENST00000428066.6 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_232848.1 | |tss_id=hg_232848.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 12:34, 17 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 2001709 |
|---|---|
| End of the center position in the TSS region: | 2001710 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000428066.6 |
|---|---|
| Distance: | 236 |
| Num_trans: | 3 |
| All_trans: | ENST00000428066.6:236 NR_131224:240 ENST00000422826.2:442 |
TATA-Box annotation
| Distance to TSS: | 18389 |
|---|---|
| Nearest PromoterID: | NM_019028 |
| Entrez ID: | 54503 |
| Nearest Unigene: | Hs.188569 |
| Nearest Refseq: | NM_019028 |
| Nearest Ensembl: | ENSG00000177054 |
| Gene Name: | H19 imprinted maternally expressed transcript |
| Gene Alias: | HIP14L|HIP3RP |
| Gene Description: | zinc finger DHHC-type containing 13 |
| Gene Type: | protein-coding |
| CpG%: | 0.03 |
| GC%: | 0.61194 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
