Difference between revisions of "TSS:Hg 233208.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=AB362928:-84 AY625000:-84 DQ288685:-84 HQ447250:-84 KJ899863:-84 KR710559:-84 KR710560:-84 CU676898:-84 JF928462:-98 JF928461:-98 ENST00000433961.5:-139 AF220028:-139 AF220025:-139 AF220029:-139 AF220026:-139 AF220027:-139 ENST00000487241.1:162 ENST00000483835.5:236 ENST00000465634.5:260 ENST00000438025.5:286 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.11 | |cpg_percent=0.11 | ||
| − | |distance=- | + | |distance=-84 |
|distance_to_tss=35 | |distance_to_tss=35 | ||
|end=155745804 | |end=155745804 | ||
| Line 10: | Line 10: | ||
|gc_percent=0.671642 | |gc_percent=0.671642 | ||
|gene_alias=MSTO2 | |gene_alias=MSTO2 | ||
| − | |gene_description= | + | |gene_description=misato family member 2, pseudogene |
| − | |gene_id= | + | |gene_id=85363 |
| − | |gene_name= | + | |gene_name=tripartite motif containing 5 |
| − | |gene_source=HGNC: | + | |gene_source=HGNC:16276 |
| − | |gene_symbol= | + | |gene_symbol=TRIM5 |
| − | |gene_synonyms= | + | |gene_synonyms=RNF88 TRIM5alpha |
|gene_type=pseudo | |gene_type=pseudo | ||
| − | |hgnc_mgi_id=HGNC: | + | |hgnc_mgi_id=HGNC:16276 |
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id=NR_024117 | |nearest_promoter_id=NR_024117 | ||
|nearest_refseq=NR_024117 | |nearest_refseq=NR_024117 | ||
|nearest_unigene=Hs.656361 | |nearest_unigene=Hs.656361 | ||
| − | |num_trans= | + | |num_trans=20 |
|species=human | |species=human | ||
|start=155745802 | |start=155745802 | ||
|start_of_center_position=5680092 | |start_of_center_position=5680092 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=AB362928 AY625000 DQ288685 HQ447250 KJ899863 KR710559 KR710560 CU676898 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_233208.1 | |tss_id=hg_233208.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=B1Q3L0 |
}} | }} | ||
Revision as of 12:42, 17 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 5680092 |
|---|---|
| End of the center position in the TSS region: | 5680093 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | AB362928 AY625000 DQ288685 HQ447250 KJ899863 KR710559 KR710560 CU676898 |
|---|---|
| Distance: | -84 |
| Num_trans: | 20 |
| All_trans: | AB362928:-84 AY625000:-84 DQ288685:-84 HQ447250:-84 KJ899863:-84 KR710559:-84 KR710560:-84 CU676898:-84 JF928462:-98 JF928461:-98 ENST00000433961.5:-139 AF220028:-139 AF220025:-139 AF220029:-139 AF220026:-139 AF220027:-139 ENST00000487241.1:162 ENST00000483835.5:236 ENST00000465634.5:260 ENST00000438025.5:286 |
TATA-Box annotation
| Distance to TSS: | 35 |
|---|---|
| Nearest PromoterID: | NR_024117 |
| Entrez ID: | 100129405 |
| Nearest Unigene: | Hs.656361 |
| Nearest Refseq: | NR_024117 |
| Nearest Ensembl: | |
| Gene Name: | tripartite motif containing 5 |
| Gene Alias: | MSTO2 |
| Gene Description: | misato family member 2, pseudogene |
| Gene Type: | pseudo |
| CpG%: | 0.11 |
| GC%: | 0.671642 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
