Difference between revisions of "TSS:Hg 238111.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=ENST00000608263.5:-33 ENST00000426658.6:-33 ENST00000422109.6:-33 ENST00000432255.6:-33 ENST00000608720.5:-33 ENST00000607923.5:-33 ENST00000608158.5:-33 NM_001269041:-33 NM_001269044:-33 NR_072975:-33 NM_001269048:-33 NM_001269052:-33 DQ778110:-33 DQ778115:-33 DQ778116:-33 DQ778117:-33 DQ778118:-33 DQ778121:-33 DQ778119:-33 DQ778120:-33 DQ778114:-33 BC130486:-249 DQ778111:-264 AF336042:-264 DQ778124:-264 DQ778125:-264 DQ778126:-264 DQ778127:-264 DQ778128:-264 DQ778129:-264 ENST00000423479.7:-273 ENST00000502686.6:-273 ENST00000433949.7:-273 ENST00000539382.5:-273 ENST00000608903.5:-273 ENST00000608858.5:-273 ENST00000608108.1:-273 NM_001269043:-293 NM_001269054:-293 NM_001269049:-293 BC060763:-295 NM_001269050:-306 NM_001269055:-306 AK313990:-306 ENST00000243914.7:-375 AK128070:-375 |
|bA392M18.1= | |bA392M18.1= | ||
|chr=chr20 | |chr=chr20 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
| − | |distance=- | + | |distance=-33 |
|distance_to_tss=30943 | |distance_to_tss=30943 | ||
|end=32159422 | |end=32159422 | ||
| Line 10: | Line 10: | ||
|entrez_id=128854 | |entrez_id=128854 | ||
|gc_percent=0.58209 | |gc_percent=0.58209 | ||
| − | |gene_alias=TSPYL3 | + | |gene_alias=TSPYL3{{!}}bA392M18.1 |
| − | |gene_description= | + | |gene_description=testis specific protein Y-linked 26, pseudogene |
| − | |gene_id= | + | |gene_id=140690 |
| − | |gene_name= | + | |gene_name=CCCTC-binding factor like |
| − | |gene_source=HGNC: | + | |gene_source=HGNC:16234 |
| − | |gene_symbol= | + | |gene_symbol=CTCFL |
| − | |gene_synonyms= | + | |gene_synonyms=BORIS CT27 dJ579F20.2 |
|gene_type=pseudo | |gene_type=pseudo | ||
| − | |hgnc_mgi_id=HGNC: | + | |hgnc_mgi_id=HGNC:16234 |
|nearest_ensembl=ENSG00000235217 | |nearest_ensembl=ENSG00000235217 | ||
|nearest_promoter_id=NR_002781 | |nearest_promoter_id=NR_002781 | ||
|nearest_refseq=NR_002781 | |nearest_refseq=NR_002781 | ||
|nearest_unigene=Hs.647447 | |nearest_unigene=Hs.647447 | ||
| − | |num_trans= | + | |num_trans=46 |
|species=human | |species=human | ||
|start=32159411 | |start=32159411 | ||
|start_of_center_position=57524833 | |start_of_center_position=57524833 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=ENST00000608263.5 ENST00000426658.6 ENST00000422109.6 ENST00000432255.6 ENST00000608720.5 ENST00000607923.5 ENST00000608158.5 NM_001269041 NM_001269044 NR_072975 NM_001269048 NM_001269052 DQ778110 DQ778115 DQ778116 DQ778117 DQ778118 DQ778121 DQ778119 DQ778120 DQ778114 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_238111.1 | |tss_id=hg_238111.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=A6XGM4 A6XGM5 F5H2V8 Q8NI51 V9GYX4 V9GZ46 |
}} | }} | ||
Revision as of 14:35, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 57524833 |
|---|---|
| End of the center position in the TSS region: | 57524834 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000608263.5 ENST00000426658.6 ENST00000422109.6 ENST00000432255.6 ENST00000608720.5 ENST00000607923.5 ENST00000608158.5 NM_001269041 NM_001269044 NR_072975 NM_001269048 NM_001269052 DQ778110 DQ778115 DQ778116 DQ778117 DQ778118 DQ778121 DQ778119 DQ778120 DQ778114 |
|---|---|
| Distance: | -33 |
| Num_trans: | 46 |
| All_trans: | ENST00000608263.5:-33 ENST00000426658.6:-33 ENST00000422109.6:-33 ENST00000432255.6:-33 ENST00000608720.5:-33 ENST00000607923.5:-33 ENST00000608158.5:-33 NM_001269041:-33 NM_001269044:-33 NR_072975:-33 NM_001269048:-33 NM_001269052:-33 DQ778110:-33 DQ778115:-33 DQ778116:-33 DQ778117:-33 DQ778118:-33 DQ778121:-33 DQ778119:-33 DQ778120:-33 DQ778114:-33 BC130486:-249 DQ778111:-264 AF336042:-264 DQ778124:-264 DQ778125:-264 DQ778126:-264 DQ778127:-264 DQ778128:-264 DQ778129:-264 ENST00000423479.7:-273 ENST00000502686.6:-273 ENST00000433949.7:-273 ENST00000539382.5:-273 ENST00000608903.5:-273 ENST00000608858.5:-273 ENST00000608108.1:-273 NM_001269043:-293 NM_001269054:-293 NM_001269049:-293 BC060763:-295 NM_001269050:-306 NM_001269055:-306 AK313990:-306 ENST00000243914.7:-375 AK128070:-375 |
TATA-Box annotation
| Distance to TSS: | 30943 |
|---|---|
| Nearest PromoterID: | NR_002781 |
| Entrez ID: | 128854 |
| Nearest Unigene: | Hs.647447 |
| Nearest Refseq: | NR_002781 |
| Nearest Ensembl: | ENSG00000235217 |
| Gene Name: | CCCTC-binding factor like |
| Gene Alias: | TSPYL3|bA392M18.1 |
| Gene Description: | testis specific protein Y-linked 26, pseudogene |
| Gene Type: | pseudo |
| CpG%: | 0.01 |
| GC%: | 0.58209 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
