Difference between revisions of "TSS:Hg 188114.1"
From referenceTSS
| Line 3: | Line 3: | ||
|CTCF-T= | |CTCF-T= | ||
|HMGB1L1= | |HMGB1L1= | ||
| − | |all_trans=ENST00000423479.7:0 ENST00000502686.6:0 ENST00000433949.7:0 ENST00000539382.5:0 ENST00000608903.5:0 ENST00000608858.5:0 ENST00000608108.1 | + | |all_trans=ENST00000423479.7:0 ENST00000502686.6:0 ENST00000433949.7:0 ENST00000539382.5:0 ENST00000608903.5:0 ENST00000608858.5:0 ENST00000608108.1:0 DQ778111:2 AF336042:2 DQ778124:2 DQ778125:2 DQ778126:2 DQ778127:2 DQ778128:2 DQ778129:2 BC130486:17 NM_001269043:-20 NM_001269054:-20 NM_001269049:-20 BC060763:-22 NM_001269050:-33 NM_001269055:-33 AK313990:-33 ENST00000243914.7:-102 AK128070:-102 ENST00000608263.5:233 ENST00000426658.6:233 ENST00000422109.6:233 ENST00000432255.6:233 ENST00000608720.5:233 ENST00000607923.5:233 ENST00000608158.5:233 NM_001269041:233 NM_001269044:233 NR_072975:233 NM_001269048:233 NM_001269052:233 DQ778110:233 DQ778115:233 DQ778116:233 DQ778117:233 DQ778118:233 DQ778121:233 DQ778119:233 DQ778120:233 DQ778114:233 DQ294738:-470 ENST00000371196.6:-472 AY071919:-472 |
|chr=chr20 | |chr=chr20 | ||
|cpg_percent=0.11 | |cpg_percent=0.11 | ||
|dJ579F20.2= | |dJ579F20.2= | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=24 |
|end=57525107 | |end=57525107 | ||
|end_of_center_position=57525104 | |end_of_center_position=57525104 | ||
|entrez_id=140690 | |entrez_id=140690 | ||
|gc_percent=0.736318 | |gc_percent=0.736318 | ||
| − | |gene_alias=BORIS | + | |gene_alias=BORIS{{!}}CT27{{!}}CTCF-T{{!}}HMGB1L1{{!}}dJ579F20.2 |
|gene_description=CCCTC-binding factor like | |gene_description=CCCTC-binding factor like | ||
|gene_id=140690 | |gene_id=140690 | ||
| Line 23: | Line 23: | ||
|hgnc_mgi_id=HGNC:16234 | |hgnc_mgi_id=HGNC:16234 | ||
|nearest_ensembl=ENSG00000124092 | |nearest_ensembl=ENSG00000124092 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001269054 |
|nearest_refseq=NM_080618 | |nearest_refseq=NM_080618 | ||
|nearest_unigene=Hs.131543 | |nearest_unigene=Hs.131543 | ||
| − | |num_trans= | + | |num_trans=49 |
|species=human | |species=human | ||
|start=57525099 | |start=57525099 | ||
|start_of_center_position=57525103 | |start_of_center_position=57525103 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000423479.7 ENST00000502686.6 ENST00000433949.7 ENST00000539382.5 ENST00000608903.5 ENST00000608858.5 ENST00000608108.1 | + | |transcript_name=ENST00000423479.7 ENST00000502686.6 ENST00000433949.7 ENST00000539382.5 ENST00000608903.5 ENST00000608858.5 ENST00000608108.1 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_188114.1 | |tss_id=hg_188114.1 | ||
Revision as of 02:05, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 57525103 |
|---|---|
| End of the center position in the TSS region: | 57525104 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000423479.7 ENST00000502686.6 ENST00000433949.7 ENST00000539382.5 ENST00000608903.5 ENST00000608858.5 ENST00000608108.1 |
|---|---|
| Distance: | 0 |
| Num_trans: | 49 |
| All_trans: | ENST00000423479.7:0 ENST00000502686.6:0 ENST00000433949.7:0 ENST00000539382.5:0 ENST00000608903.5:0 ENST00000608858.5:0 ENST00000608108.1:0 DQ778111:2 AF336042:2 DQ778124:2 DQ778125:2 DQ778126:2 DQ778127:2 DQ778128:2 DQ778129:2 BC130486:17 NM_001269043:-20 NM_001269054:-20 NM_001269049:-20 BC060763:-22 NM_001269050:-33 NM_001269055:-33 AK313990:-33 ENST00000243914.7:-102 AK128070:-102 ENST00000608263.5:233 ENST00000426658.6:233 ENST00000422109.6:233 ENST00000432255.6:233 ENST00000608720.5:233 ENST00000607923.5:233 ENST00000608158.5:233 NM_001269041:233 NM_001269044:233 NR_072975:233 NM_001269048:233 NM_001269052:233 DQ778110:233 DQ778115:233 DQ778116:233 DQ778117:233 DQ778118:233 DQ778121:233 DQ778119:233 DQ778120:233 DQ778114:233 DQ294738:-470 ENST00000371196.6:-472 AY071919:-472 |
TATA-Box annotation
| Distance to TSS: | 24 |
|---|---|
| Nearest PromoterID: | NM_001269054 |
| Entrez ID: | 140690 |
| Nearest Unigene: | Hs.131543 |
| Nearest Refseq: | NM_080618 |
| Nearest Ensembl: | ENSG00000124092 |
| Gene Name: | CCCTC-binding factor like |
| Gene Alias: | BORIS|CT27|CTCF-T|HMGB1L1|dJ579F20.2 |
| Gene Description: | CCCTC-binding factor like |
| Gene Type: | protein-coding |
| CpG%: | 0.11 |
| GC%: | 0.736318 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
