Difference between revisions of "TSS:Hg 189957.1"
From referenceTSS
| Line 4: | Line 4: | ||
|CF6= | |CF6= | ||
|F6= | |F6= | ||
| − | |all_trans=S41243:357 S41242:357 | + | |all_trans=LF339739:-123 MA575316:-123 LF339738:259 MA575315:259 LF339740:-329 MA575317:-329 S41243:357 S41242:357 LF339737:401 MA575314:401 LF339741:-439 MA575318:-439 |
|chr=chr21 | |chr=chr21 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
| − | |distance= | + | |distance=-123 |
|distance_to_tss=-145601 | |distance_to_tss=-145601 | ||
|end=25881267 | |end=25881267 | ||
| Line 13: | Line 13: | ||
|entrez_id=522 | |entrez_id=522 | ||
|gc_percent=0.358209 | |gc_percent=0.358209 | ||
| − | |gene_alias=ATP5 | + | |gene_alias=ATP5{{!}}ATP5A{{!}}ATP5J{{!}}ATPM{{!}}CF6{{!}}F6 |
| − | |gene_description= | + | |gene_description=ATP synthase peripheral stalk subunit F6 |
|gene_id=351 | |gene_id=351 | ||
| − | |gene_name= | + | |gene_name=ATP5PF |
|gene_source=HGNC:620 | |gene_source=HGNC:620 | ||
|gene_symbol=APP | |gene_symbol=APP | ||
| Line 23: | Line 23: | ||
|hgnc_mgi_id=HGNC:620 | |hgnc_mgi_id=HGNC:620 | ||
|nearest_ensembl=ENSG00000154723 | |nearest_ensembl=ENSG00000154723 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001003696 |
|nearest_refseq=NM_001685 | |nearest_refseq=NM_001685 | ||
|nearest_unigene=Hs.246310 | |nearest_unigene=Hs.246310 | ||
| − | |num_trans= | + | |num_trans=12 |
|species=human | |species=human | ||
|start=25881243 | |start=25881243 | ||
|start_of_center_position=25881255 | |start_of_center_position=25881255 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=LF339739 MA575316 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_189957.1 | |tss_id=hg_189957.1 | ||
Latest revision as of 02:48, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 25881255 |
|---|---|
| End of the center position in the TSS region: | 25881256 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LF339739 MA575316 |
|---|---|
| Distance: | -123 |
| Num_trans: | 12 |
| All_trans: | LF339739:-123 MA575316:-123 LF339738:259 MA575315:259 LF339740:-329 MA575317:-329 S41243:357 S41242:357 LF339737:401 MA575314:401 LF339741:-439 MA575318:-439 |
TATA-Box annotation
| Distance to TSS: | -145601 |
|---|---|
| Nearest PromoterID: | NM_001003696 |
| Entrez ID: | 522 |
| Nearest Unigene: | Hs.246310 |
| Nearest Refseq: | NM_001685 |
| Nearest Ensembl: | ENSG00000154723 |
| Gene Name: | ATP5PF |
| Gene Alias: | ATP5|ATP5A|ATP5J|ATPM|CF6|F6 |
| Gene Description: | ATP synthase peripheral stalk subunit F6 |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.358209 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
