Difference between revisions of "TSS:Hg 190001.1"
From referenceTSS
| Line 8: | Line 8: | ||
|PN-II= | |PN-II= | ||
|PN2= | |PN2= | ||
| − | |all_trans=ENST00000359726.7:0 NM_001136131:0 | + | |all_trans=ENST00000359726.7:0 NM_001136131:0 LF385472:0 MA621049:0 AK296229:0 LF210650:48 MA446227:48 LF212681:-186 MA448258:-186 LF385141:288 MA620718:288 ENST00000357903.7:321 ENST00000346798.8:338 NM_001136129:338 NM_000484:338 NM_201414:338 NM_201413:338 NM_001204302:338 NM_001204301:338 NM_001204303:338 NM_001136130:338 NM_001385253:338 M35675:338 ENST00000348990.9:341 Y00264:341 AK297412:341 AK294534:341 AK298861:341 LF214042:342 MA449619:342 BC065529:357 BC065523:357 ENST00000354192.7:361 AF282245:361 ENST00000474136.5:362 BC004369:362 X06989:370 MA353526:402 AK297229:424 AK312326:424 ENST00000358918.7:441 ENST00000439274.6:454 HM005315:468 AB384791:483 EU832797:488 GQ129348:488 KJ901289:488 |
|chr=chr21 | |chr=chr21 | ||
|cpg_percent=0.07 | |cpg_percent=0.07 | ||
| Line 17: | Line 17: | ||
|entrez_id=351 | |entrez_id=351 | ||
|gc_percent=0.577114 | |gc_percent=0.577114 | ||
| − | |gene_alias=AAA | + | |gene_alias=AAA{{!}}ABETA{{!}}ABPP{{!}}AD1{{!}}APPI{{!}}CTFgamma{{!}}CVAP{{!}}PN-II{{!}}PN2{{!}}preA4 |
|gene_description=amyloid beta precursor protein | |gene_description=amyloid beta precursor protein | ||
|gene_id=351 | |gene_id=351 | ||
| Line 23: | Line 23: | ||
|gene_source=HGNC:620 | |gene_source=HGNC:620 | ||
|gene_symbol=APP | |gene_symbol=APP | ||
| − | |gene_synonyms= | + | |gene_synonyms=alpha-sAPP |
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:620 | |hgnc_mgi_id=HGNC:620 | ||
| Line 30: | Line 30: | ||
|nearest_refseq=NM_000484 | |nearest_refseq=NM_000484 | ||
|nearest_unigene=Hs.434980 | |nearest_unigene=Hs.434980 | ||
| − | |num_trans= | + | |num_trans=47 |
|species=human | |species=human | ||
|start=26171107 | |start=26171107 | ||
|start_of_center_position=26171120 | |start_of_center_position=26171120 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000359726.7 NM_001136131 | + | |transcript_name=ENST00000359726.7 NM_001136131 LF385472 MA621049 AK296229 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_190001.1 | |tss_id=hg_190001.1 | ||
Revision as of 02:49, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 26171120 |
|---|---|
| End of the center position in the TSS region: | 26171121 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000359726.7 NM_001136131 LF385472 MA621049 AK296229 |
|---|---|
| Distance: | 0 |
| Num_trans: | 47 |
| All_trans: | ENST00000359726.7:0 NM_001136131:0 LF385472:0 MA621049:0 AK296229:0 LF210650:48 MA446227:48 LF212681:-186 MA448258:-186 LF385141:288 MA620718:288 ENST00000357903.7:321 ENST00000346798.8:338 NM_001136129:338 NM_000484:338 NM_201414:338 NM_201413:338 NM_001204302:338 NM_001204301:338 NM_001204303:338 NM_001136130:338 NM_001385253:338 M35675:338 ENST00000348990.9:341 Y00264:341 AK297412:341 AK294534:341 AK298861:341 LF214042:342 MA449619:342 BC065529:357 BC065523:357 ENST00000354192.7:361 AF282245:361 ENST00000474136.5:362 BC004369:362 X06989:370 MA353526:402 AK297229:424 AK312326:424 ENST00000358918.7:441 ENST00000439274.6:454 HM005315:468 AB384791:483 EU832797:488 GQ129348:488 KJ901289:488 |
TATA-Box annotation
| Distance to TSS: | 8 |
|---|---|
| Nearest PromoterID: | NM_001136131 |
| Entrez ID: | 351 |
| Nearest Unigene: | Hs.434980 |
| Nearest Refseq: | NM_000484 |
| Nearest Ensembl: | ENSG00000142192 |
| Gene Name: | amyloid beta precursor protein |
| Gene Alias: | AAA|ABETA|ABPP|AD1|APPI|CTFgamma|CVAP|PN-II|PN2|preA4 |
| Gene Description: | amyloid beta precursor protein |
| Gene Type: | protein-coding |
| CpG%: | 0.07 |
| GC%: | 0.577114 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
