Difference between revisions of "TSS:Hg 238420.1"
From referenceTSS
| Line 11: | Line 11: | ||
|chr=chr21 | |chr=chr21 | ||
|cpg_percent=0.155 | |cpg_percent=0.155 | ||
| − | |distance= | + | |distance=NA |
| − | |distance_to_tss= | + | |distance_to_tss=38 |
|end=26170732 | |end=26170732 | ||
|end_of_center_position=46464849 | |end_of_center_position=46464849 | ||
|entrez_id=351 | |entrez_id=351 | ||
|gc_percent=0.771144 | |gc_percent=0.771144 | ||
| − | |gene_alias=AAA | + | |gene_alias=AAA{{!}}ABETA{{!}}ABPP{{!}}AD1{{!}}APPI{{!}}CTFgamma{{!}}CVAP{{!}}PN-II{{!}}PN2{{!}}preA4 |
|gene_description=amyloid beta precursor protein | |gene_description=amyloid beta precursor protein | ||
|gene_id=351 | |gene_id=351 | ||
| − | |gene_name= | + | |gene_name=APP |
|gene_source=HGNC:620 | |gene_source=HGNC:620 | ||
|gene_symbol=APP | |gene_symbol=APP | ||
| Line 27: | Line 27: | ||
|hgnc_mgi_id=HGNC:620 | |hgnc_mgi_id=HGNC:620 | ||
|nearest_ensembl=ENSG00000142192 | |nearest_ensembl=ENSG00000142192 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001136129 |
|nearest_refseq=NM_000484 | |nearest_refseq=NM_000484 | ||
|nearest_unigene=Hs.434980 | |nearest_unigene=Hs.434980 | ||
| − | |num_trans= | + | |num_trans=0 |
|species=human | |species=human | ||
|start=26170731 | |start=26170731 | ||
|start_of_center_position=46464848 | |start_of_center_position=46464848 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name= |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_238420.1 | |tss_id=hg_238420.1 | ||
Revision as of 14:42, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 46464848 |
|---|---|
| End of the center position in the TSS region: | 46464849 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | |
|---|---|
| Distance: | NA |
| Num_trans: | 0 |
| All_trans: | X06989:-6 ENST00000474136.5:-14 uc061zhv.1:-14 BC004369:-14 ENST00000354192.7:-15 uc010glj.4:-15 AF282245:-15 BC065529:-19 BC065523:-19 ENST00000348990.9:-35 uc002ymb.4:-35 Y00264:-35 AK297412:-35 AK294534:-35 AK298861:-35 M35675:-38 AK297229:48 AK312326:48 ENST00000357903.7:-55 uc002yma.4:-55 ENST00000358918.7:65 uc021whz.2:65 ENST00000346798.7:78 ENST00000439274.6:78 uc002ylz.4:78 uc011ach.3:78 NM_000484:-88 NM_001136130:-88 NM_001204302:-88 NM_001204303:-88 NM_001204301:-88 NM_201414:-88 NM_201413:-88 NM_001136129:-88 AB384791:107 EU832797:112 GQ129348:112 KJ901289:112 ENST00000359726.7:-396 NM_001136131:-396 uc011aci.3:-396 AK296229:-396 |
TATA-Box annotation
| Distance to TSS: | 38 |
|---|---|
| Nearest PromoterID: | NM_001136129 |
| Entrez ID: | 351 |
| Nearest Unigene: | Hs.434980 |
| Nearest Refseq: | NM_000484 |
| Nearest Ensembl: | ENSG00000142192 |
| Gene Name: | APP |
| Gene Alias: | AAA|ABETA|ABPP|AD1|APPI|CTFgamma|CVAP|PN-II|PN2|preA4 |
| Gene Description: | amyloid beta precursor protein |
| Gene Type: | protein-coding |
| CpG%: | 0.155 |
| GC%: | 0.771144 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
