Difference between revisions of "TSS:Hg 154455.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENST00000562764.5:87 uc059vau.1:87 NM_020465:101 ENST00000258187.9:121 uc002enk.4:121 ENST00000564207.5:-137 uc059vat.1:-137 ENST00000569404.5:160 uc059...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |SMAP-8= | ||
| + | |SMAP8= | ||
|all_trans=ENST00000562764.5:87 uc059vau.1:87 NM_020465:101 ENST00000258187.9:121 uc002enk.4:121 ENST00000564207.5:-137 uc059vat.1:-137 ENST00000569404.5:160 uc059vav.1:160 ENST00000569539.5:166 uc059vaw.1:166 ENST00000564126.5:169 uc059vax.1:169 ENST00000562725.5:172 uc059vay.1:172 ENST00000565304.5:179 uc059vaz.1:179 ENST00000567667.5:181 uc059vba.1:181 AB021172:201 ENST00000394282.8:480 uc002enm.4:480 | |all_trans=ENST00000562764.5:87 uc059vau.1:87 NM_020465:101 ENST00000258187.9:121 uc002enk.4:121 ENST00000564207.5:-137 uc059vat.1:-137 ENST00000569404.5:160 uc059vav.1:160 ENST00000569539.5:166 uc059vaw.1:166 ENST00000564126.5:169 uc059vax.1:169 ENST00000562725.5:172 uc059vay.1:172 ENST00000565304.5:179 uc059vaz.1:179 ENST00000567667.5:181 uc059vba.1:181 AB021172:201 ENST00000394282.8:480 uc002enm.4:480 | ||
|chr=chr16 | |chr=chr16 | ||
| Line 6: | Line 8: | ||
|distance_to_tss=-120 | |distance_to_tss=-120 | ||
|end=58463544 | |end=58463544 | ||
| + | |end_of_center_position=58463526 | ||
|entrez_id=65009 | |entrez_id=65009 | ||
|gc_percent=0.810945 | |gc_percent=0.810945 | ||
| − | |gene_alias=BDM1 | + | |gene_alias=BDM1 |
|gene_description=NDRG family member 4 | |gene_description=NDRG family member 4 | ||
|gene_id=65009 | |gene_id=65009 | ||
| Line 24: | Line 27: | ||
|species=human | |species=human | ||
|start=58463506 | |start=58463506 | ||
| + | |start_of_center_position=58463525 | ||
|strand=+ | |strand=+ | ||
|transcript_name=ENST00000562764.5 uc059vau.1 | |transcript_name=ENST00000562764.5 uc059vau.1 | ||
Revision as of 19:57, 14 May 2019
Basic information about the TSS
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| Start of the center position in the TSS region: | 58463525 |
|---|---|
| End of the center position in the TSS region: | 58463526 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000562764.5 uc059vau.1 |
|---|---|
| Distance: | 87 |
| Num_trans: | 22 |
| All_trans: | ENST00000562764.5:87 uc059vau.1:87 NM_020465:101 ENST00000258187.9:121 uc002enk.4:121 ENST00000564207.5:-137 uc059vat.1:-137 ENST00000569404.5:160 uc059vav.1:160 ENST00000569539.5:166 uc059vaw.1:166 ENST00000564126.5:169 uc059vax.1:169 ENST00000562725.5:172 uc059vay.1:172 ENST00000565304.5:179 uc059vaz.1:179 ENST00000567667.5:181 uc059vba.1:181 AB021172:201 ENST00000394282.8:480 uc002enm.4:480 |
TATA-Box annotation
| Distance to TSS: | -120 |
|---|---|
| Nearest PromoterID: | NM_020465 |
| Entrez ID: | 65009 |
| Nearest Unigene: | Hs.322430 |
| Nearest Refseq: | NM_020465 |
| Nearest Ensembl: | ENSG00000103034 |
| Gene Name: | NDRG family member 4 |
| Gene Alias: | BDM1 |
| Gene Description: | NDRG family member 4 |
| Gene Type: | protein-coding |
| CpG%: | 0.17 |
| GC%: | 0.810945 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
