Difference between revisions of "TSS:Hg 154458.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENST00000566065.5:0 ENST00000564867.5:0 ENST00000567454.5:0 uc059vbb.1:0 uc059vbc.1:0 uc059vbd.1:0 ENST00000569578.5:12 ENST00000421602.6:12 uc059vbe.1:...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |SMAP-8= | ||
| + | |SMAP8= | ||
|all_trans=ENST00000566065.5:0 ENST00000564867.5:0 ENST00000567454.5:0 uc059vbb.1:0 uc059vbc.1:0 uc059vbd.1:0 ENST00000569578.5:12 ENST00000421602.6:12 uc059vbe.1:12 uc059vbf.1:12 AK126729:12 ENST00000561779.5:15 uc059vbg.1:15 ENST00000565430.5:17 ENST00000567063.5:17 uc059vbh.1:17 uc059vbi.1:17 ENST00000566041.5:24 uc059vbj.1:24 ENST00000566061.5:29 uc059vbk.1:29 AK126574:29 CR936733:116 NM_001130487:-184 ENST00000394282.8:-250 uc002enm.4:-250 ENST00000565434.5:485 uc059vbl.1:485 | |all_trans=ENST00000566065.5:0 ENST00000564867.5:0 ENST00000567454.5:0 uc059vbb.1:0 uc059vbc.1:0 uc059vbd.1:0 ENST00000569578.5:12 ENST00000421602.6:12 uc059vbe.1:12 uc059vbf.1:12 AK126729:12 ENST00000561779.5:15 uc059vbg.1:15 ENST00000565430.5:17 ENST00000567063.5:17 uc059vbh.1:17 uc059vbi.1:17 ENST00000566041.5:24 uc059vbj.1:24 ENST00000566061.5:29 uc059vbk.1:29 AK126574:29 CR936733:116 NM_001130487:-184 ENST00000394282.8:-250 uc002enm.4:-250 ENST00000565434.5:485 uc059vbl.1:485 | ||
|chr=chr16 | |chr=chr16 | ||
| Line 6: | Line 8: | ||
|distance_to_tss=191 | |distance_to_tss=191 | ||
|end=58464289 | |end=58464289 | ||
| + | |end_of_center_position=58464282 | ||
|entrez_id=65009 | |entrez_id=65009 | ||
|gc_percent=0.696517 | |gc_percent=0.696517 | ||
| − | |gene_alias=BDM1 | + | |gene_alias=BDM1 |
|gene_description=NDRG family member 4 | |gene_description=NDRG family member 4 | ||
|gene_id=65009 | |gene_id=65009 | ||
| Line 24: | Line 27: | ||
|species=human | |species=human | ||
|start=58464273 | |start=58464273 | ||
| + | |start_of_center_position=58464281 | ||
|strand=+ | |strand=+ | ||
|tata_box="-44(TTTTTTAAACCG,+,0.00)" | |tata_box="-44(TTTTTTAAACCG,+,0.00)" | ||
Revision as of 19:58, 14 May 2019
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 58464281 |
|---|---|
| End of the center position in the TSS region: | 58464282 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000566065.5 ENST00000564867.5 ENST00000567454.5 uc059vbb.1 uc059vbc.1 uc059vbd.1 |
|---|---|
| Distance: | 0 |
| Num_trans: | 28 |
| All_trans: | ENST00000566065.5:0 ENST00000564867.5:0 ENST00000567454.5:0 uc059vbb.1:0 uc059vbc.1:0 uc059vbd.1:0 ENST00000569578.5:12 ENST00000421602.6:12 uc059vbe.1:12 uc059vbf.1:12 AK126729:12 ENST00000561779.5:15 uc059vbg.1:15 ENST00000565430.5:17 ENST00000567063.5:17 uc059vbh.1:17 uc059vbi.1:17 ENST00000566041.5:24 uc059vbj.1:24 ENST00000566061.5:29 uc059vbk.1:29 AK126574:29 CR936733:116 NM_001130487:-184 ENST00000394282.8:-250 uc002enm.4:-250 ENST00000565434.5:485 uc059vbl.1:485 |
TATA-Box annotation
| Distance to TSS: | 191 |
|---|---|
| Nearest PromoterID: | NM_001130487 |
| Entrez ID: | 65009 |
| Nearest Unigene: | Hs.322430 |
| Nearest Refseq: | NM_020465 |
| Nearest Ensembl: | ENSG00000103034 |
| Gene Name: | NDRG family member 4 |
| Gene Alias: | BDM1 |
| Gene Description: | NDRG family member 4 |
| Gene Type: | protein-coding |
| CpG%: | 0.11 |
| GC%: | 0.696517 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-44(TTTTTTAAACCG,+,0.00)" |
