Difference between revisions of "TSS:Hg 121789.1"
From referenceTSS
| Line 2: | Line 2: | ||
|KOX-1= | |KOX-1= | ||
|RENOX= | |RENOX= | ||
| − | |all_trans=ENST00000528341.5 | + | |all_trans=ENST00000528341.5:-172 AK298357:-172 AK311381:-177 NM_001291929:-200 NM_001291927:-418 AK298328:-418 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
|distance=-172 | |distance=-172 | ||
| − | |distance_to_tss= | + | |distance_to_tss=203 |
|end=89490560 | |end=89490560 | ||
|end_of_center_position=89490557 | |end_of_center_position=89490557 | ||
|entrez_id=50507 | |entrez_id=50507 | ||
|gc_percent=0.402985 | |gc_percent=0.402985 | ||
| − | |gene_alias=KOX | + | |gene_alias=KOX{{!}}KOX-1{{!}}RENOX |
|gene_description=NADPH oxidase 4 | |gene_description=NADPH oxidase 4 | ||
|gene_id=50507 | |gene_id=50507 | ||
| Line 24: | Line 24: | ||
|nearest_refseq=NM_016931 | |nearest_refseq=NM_016931 | ||
|nearest_unigene=Hs.371036 | |nearest_unigene=Hs.371036 | ||
| − | |num_trans= | + | |num_trans=6 |
|species=human | |species=human | ||
|start=89490553 | |start=89490553 | ||
|start_of_center_position=89490556 | |start_of_center_position=89490556 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000528341.5 | + | |transcript_name=ENST00000528341.5 AK298357 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_121789.1 | |tss_id=hg_121789.1 | ||
Revision as of 00:33, 16 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 89490556 |
|---|---|
| End of the center position in the TSS region: | 89490557 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000528341.5 AK298357 |
|---|---|
| Distance: | -172 |
| Num_trans: | 6 |
| All_trans: | ENST00000528341.5:-172 AK298357:-172 AK311381:-177 NM_001291929:-200 NM_001291927:-418 AK298328:-418 |
TATA-Box annotation
| Distance to TSS: | 203 |
|---|---|
| Nearest PromoterID: | NM_001291929 |
| Entrez ID: | 50507 |
| Nearest Unigene: | Hs.371036 |
| Nearest Refseq: | NM_016931 |
| Nearest Ensembl: | ENSG00000086991 |
| Gene Name: | NADPH oxidase 4 |
| Gene Alias: | KOX|KOX-1|RENOX |
| Gene Description: | NADPH oxidase 4 |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.402985 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
