Difference between revisions of "TSS:Hg 121794.1"
From referenceTSS
| Line 2: | Line 2: | ||
|KOX-1= | |KOX-1= | ||
|RENOX= | |RENOX= | ||
| − | |all_trans=NM_001291927:0 AK298328:0 ENST00000343727.9 | + | |all_trans=NM_001291927:0 AK298328:0 ENST00000343727.9:-137 NM_001291929:212 AK311381:235 ENST00000528341.5:240 AK298357:240 ENST00000531342.5:-252 ENST00000375979.7:-252 AF261943:-252 AJ704725:-252 AJ704726:-252 AJ704727:-252 AJ704728:-252 AJ704729:-252 AY288918:-252 CU691812:-255 JF432404:-256 KJ893751:-256 AK311389:-299 BC040105:-324 ENST00000534731.5:-334 ENST00000527626.5:-334 AK291830:-334 AK298376:-334 AF254621:-338 ENST00000529343.5:-363 ENST00000525196.5:-366 BC034780:-366 ENST00000263317.9:-381 NM_001291926:-381 NM_016931:-381 NM_001143836:-381 NR_120406:-381 ENST00000525278.1:-400 LP764880:-491 LP764881:-491 AB041035:-491 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| Line 11: | Line 11: | ||
|entrez_id=50507 | |entrez_id=50507 | ||
|gc_percent=0.422886 | |gc_percent=0.422886 | ||
| − | |gene_alias=KOX | + | |gene_alias=KOX{{!}}KOX-1{{!}}RENOX |
|gene_description=NADPH oxidase 4 | |gene_description=NADPH oxidase 4 | ||
|gene_id=50507 | |gene_id=50507 | ||
| Line 24: | Line 24: | ||
|nearest_refseq=NM_016931 | |nearest_refseq=NM_016931 | ||
|nearest_unigene=Hs.371036 | |nearest_unigene=Hs.371036 | ||
| − | |num_trans= | + | |num_trans=38 |
|species=human | |species=human | ||
|start=89490971 | |start=89490971 | ||
|start_of_center_position=89490982 | |start_of_center_position=89490982 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=73(CCCTTTAAACAT,+,0.00) |
|transcript_name=NM_001291927 AK298328 | |transcript_name=NM_001291927 AK298328 | ||
|tss_classification=yes | |tss_classification=yes | ||
Revision as of 00:33, 16 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 89490982 |
|---|---|
| End of the center position in the TSS region: | 89490983 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | NM_001291927 AK298328 |
|---|---|
| Distance: | 0 |
| Num_trans: | 38 |
| All_trans: | NM_001291927:0 AK298328:0 ENST00000343727.9:-137 NM_001291929:212 AK311381:235 ENST00000528341.5:240 AK298357:240 ENST00000531342.5:-252 ENST00000375979.7:-252 AF261943:-252 AJ704725:-252 AJ704726:-252 AJ704727:-252 AJ704728:-252 AJ704729:-252 AY288918:-252 CU691812:-255 JF432404:-256 KJ893751:-256 AK311389:-299 BC040105:-324 ENST00000534731.5:-334 ENST00000527626.5:-334 AK291830:-334 AK298376:-334 AF254621:-338 ENST00000529343.5:-363 ENST00000525196.5:-366 BC034780:-366 ENST00000263317.9:-381 NM_001291926:-381 NM_016931:-381 NM_001143836:-381 NR_120406:-381 ENST00000525278.1:-400 LP764880:-491 LP764881:-491 AB041035:-491 |
TATA-Box annotation
| Distance to TSS: | -5 |
|---|---|
| Nearest PromoterID: | NM_001291927 |
| Entrez ID: | 50507 |
| Nearest Unigene: | Hs.371036 |
| Nearest Refseq: | NM_016931 |
| Nearest Ensembl: | ENSG00000086991 |
| Gene Name: | NADPH oxidase 4 |
| Gene Alias: | KOX|KOX-1|RENOX |
| Gene Description: | NADPH oxidase 4 |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.422886 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 73(CCCTTTAAACAT,+,0.00) |
