Difference between revisions of "TSS:Hg 121796.1"
From referenceTSS
| Line 2: | Line 2: | ||
|KOX-1= | |KOX-1= | ||
|RENOX= | |RENOX= | ||
| − | |all_trans=ENST00000534731.5:0 ENST00000527626.5 | + | |all_trans=ENST00000534731.5:0 ENST00000527626.5:0 AK291830:0 AF254621:0 AK298376:0 BC040105:3 ENST00000529343.5:-18 ENST00000525196.5:-21 BC034780:-21 AK311389:28 ENST00000263317.9:-36 NM_001291926:-36 NM_016931:-36 NM_001143836:-36 NR_120406:-36 ENST00000525278.1:-55 JF432404:71 KJ893751:71 CU691812:72 ENST00000531342.5:75 ENST00000375979.7:75 AF261943:75 AJ704725:75 AJ704726:75 AJ704727:75 AJ704728:75 AJ704729:75 AY288918:75 LP764880:-146 LP764881:-146 AB041035:-146 ENST00000343727.9:190 ENST00000393282.2:-226 BC051371:-226 NM_001291927:343 AK298328:343 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.125 | |cpg_percent=0.125 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=45 |
|end=89491339 | |end=89491339 | ||
|end_of_center_position=89491330 | |end_of_center_position=89491330 | ||
|entrez_id=50507 | |entrez_id=50507 | ||
|gc_percent=0.751244 | |gc_percent=0.751244 | ||
| − | |gene_alias=KOX | + | |gene_alias=KOX{{!}}KOX-1{{!}}RENOX |
|gene_description=NADPH oxidase 4 | |gene_description=NADPH oxidase 4 | ||
|gene_id=50507 | |gene_id=50507 | ||
| Line 21: | Line 21: | ||
|hgnc_mgi_id=HGNC:7891 | |hgnc_mgi_id=HGNC:7891 | ||
|nearest_ensembl=ENSG00000086991 | |nearest_ensembl=ENSG00000086991 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001291926 |
|nearest_refseq=NM_016931 | |nearest_refseq=NM_016931 | ||
|nearest_unigene=Hs.371036 | |nearest_unigene=Hs.371036 | ||
| − | |num_trans= | + | |num_trans=36 |
|species=human | |species=human | ||
|start=89491320 | |start=89491320 | ||
|start_of_center_position=89491329 | |start_of_center_position=89491329 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000534731.5 ENST00000527626.5 | + | |transcript_name=ENST00000534731.5 ENST00000527626.5 AK291830 AF254621 AK298376 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_121796.1 | |tss_id=hg_121796.1 | ||
Revision as of 00:33, 16 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 89491329 |
|---|---|
| End of the center position in the TSS region: | 89491330 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000534731.5 ENST00000527626.5 AK291830 AF254621 AK298376 |
|---|---|
| Distance: | 0 |
| Num_trans: | 36 |
| All_trans: | ENST00000534731.5:0 ENST00000527626.5:0 AK291830:0 AF254621:0 AK298376:0 BC040105:3 ENST00000529343.5:-18 ENST00000525196.5:-21 BC034780:-21 AK311389:28 ENST00000263317.9:-36 NM_001291926:-36 NM_016931:-36 NM_001143836:-36 NR_120406:-36 ENST00000525278.1:-55 JF432404:71 KJ893751:71 CU691812:72 ENST00000531342.5:75 ENST00000375979.7:75 AF261943:75 AJ704725:75 AJ704726:75 AJ704727:75 AJ704728:75 AJ704729:75 AY288918:75 LP764880:-146 LP764881:-146 AB041035:-146 ENST00000343727.9:190 ENST00000393282.2:-226 BC051371:-226 NM_001291927:343 AK298328:343 |
TATA-Box annotation
| Distance to TSS: | 45 |
|---|---|
| Nearest PromoterID: | NM_001291926 |
| Entrez ID: | 50507 |
| Nearest Unigene: | Hs.371036 |
| Nearest Refseq: | NM_016931 |
| Nearest Ensembl: | ENSG00000086991 |
| Gene Name: | NADPH oxidase 4 |
| Gene Alias: | KOX|KOX-1|RENOX |
| Gene Description: | NADPH oxidase 4 |
| Gene Type: | protein-coding |
| CpG%: | 0.125 |
| GC%: | 0.751244 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
