Difference between revisions of "TSS:Hg 121798.1"
From referenceTSS
| Line 2: | Line 2: | ||
|KOX-1= | |KOX-1= | ||
|RENOX= | |RENOX= | ||
| − | |all_trans=ENST00000525278.1:3 | + | |all_trans=ENST00000525278.1:3 ENST00000263317.9:22 NM_001291926:22 NM_016931:22 NM_001143836:22 NR_120406:22 ENST00000525196.5:37 BC034780:37 ENST00000529343.5:40 AF254621:65 ENST00000534731.5:69 ENST00000527626.5:69 AK291830:69 AK298376:69 LP764880:-79 LP764881:-79 AB041035:-79 BC040105:79 AK311389:104 JF432404:147 KJ893751:147 CU691812:148 ENST00000531342.5:151 ENST00000375979.7:151 AF261943:151 AJ704725:151 AJ704726:151 AJ704727:151 AJ704728:151 AJ704729:151 AY288918:151 ENST00000393282.2:-159 BC051371:-159 ENST00000343727.9:266 NM_001291927:419 AK298328:419 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.105 | |cpg_percent=0.105 | ||
|distance=3 | |distance=3 | ||
| − | |distance_to_tss= | + | |distance_to_tss=-26 |
|end=89491406 | |end=89491406 | ||
|end_of_center_position=89491402 | |end_of_center_position=89491402 | ||
|entrez_id=50507 | |entrez_id=50507 | ||
|gc_percent=0.731343 | |gc_percent=0.731343 | ||
| − | |gene_alias=KOX | + | |gene_alias=KOX{{!}}KOX-1{{!}}RENOX |
|gene_description=NADPH oxidase 4 | |gene_description=NADPH oxidase 4 | ||
|gene_id=50507 | |gene_id=50507 | ||
| Line 24: | Line 24: | ||
|nearest_refseq=NM_016931 | |nearest_refseq=NM_016931 | ||
|nearest_unigene=Hs.371036 | |nearest_unigene=Hs.371036 | ||
| − | |num_trans= | + | |num_trans=36 |
|species=human | |species=human | ||
|start=89491396 | |start=89491396 | ||
|start_of_center_position=89491401 | |start_of_center_position=89491401 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000525278 | + | |transcript_name=ENST00000525278.1 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_121798.1 | |tss_id=hg_121798.1 | ||
Revision as of 00:33, 16 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 89491401 |
|---|---|
| End of the center position in the TSS region: | 89491402 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000525278.1 |
|---|---|
| Distance: | 3 |
| Num_trans: | 36 |
| All_trans: | ENST00000525278.1:3 ENST00000263317.9:22 NM_001291926:22 NM_016931:22 NM_001143836:22 NR_120406:22 ENST00000525196.5:37 BC034780:37 ENST00000529343.5:40 AF254621:65 ENST00000534731.5:69 ENST00000527626.5:69 AK291830:69 AK298376:69 LP764880:-79 LP764881:-79 AB041035:-79 BC040105:79 AK311389:104 JF432404:147 KJ893751:147 CU691812:148 ENST00000531342.5:151 ENST00000375979.7:151 AF261943:151 AJ704725:151 AJ704726:151 AJ704727:151 AJ704728:151 AJ704729:151 AY288918:151 ENST00000393282.2:-159 BC051371:-159 ENST00000343727.9:266 NM_001291927:419 AK298328:419 |
TATA-Box annotation
| Distance to TSS: | -26 |
|---|---|
| Nearest PromoterID: | NM_001143836 |
| Entrez ID: | 50507 |
| Nearest Unigene: | Hs.371036 |
| Nearest Refseq: | NM_016931 |
| Nearest Ensembl: | ENSG00000086991 |
| Gene Name: | NADPH oxidase 4 |
| Gene Alias: | KOX|KOX-1|RENOX |
| Gene Description: | NADPH oxidase 4 |
| Gene Type: | protein-coding |
| CpG%: | 0.105 |
| GC%: | 0.731343 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
