Difference between revisions of "TSS:Hg 121800.1"
From referenceTSS
| Line 2: | Line 2: | ||
|KOX-1= | |KOX-1= | ||
|RENOX= | |RENOX= | ||
| − | |all_trans= | + | |all_trans=LP764880:-4 LP764881:-4 AB041035:-4 ENST00000525278.1:77 ENST00000393282.2:-84 BC051371:-84 ENST00000263317.9:96 NM_001291926:96 NM_016931:96 NM_001143836:96 NR_120406:96 ENST00000525196.5:111 BC034780:111 ENST00000529343.5:114 AF254621:139 ENST00000534731.5:143 ENST00000527626.5:143 AK291830:143 AK298376:143 BC040105:153 AK311389:178 JF432404:221 KJ893751:221 CU691812:222 ENST00000531342.5:225 ENST00000375979.7:225 AF261943:225 AJ704725:225 AJ704726:225 AJ704727:225 AJ704728:225 AJ704729:225 AY288918:225 ENST00000343727.9:340 NM_001291927:493 AK298328:493 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.105 | |cpg_percent=0.105 | ||
| Line 11: | Line 11: | ||
|entrez_id=50507 | |entrez_id=50507 | ||
|gc_percent=0.746269 | |gc_percent=0.746269 | ||
| − | |gene_alias=KOX | + | |gene_alias=KOX{{!}}KOX-1{{!}}RENOX |
|gene_description=NADPH oxidase 4 | |gene_description=NADPH oxidase 4 | ||
|gene_id=50507 | |gene_id=50507 | ||
| Line 21: | Line 21: | ||
|hgnc_mgi_id=HGNC:7891 | |hgnc_mgi_id=HGNC:7891 | ||
|nearest_ensembl=ENSG00000086991 | |nearest_ensembl=ENSG00000086991 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NR_120406 |
|nearest_refseq=NM_016931 | |nearest_refseq=NM_016931 | ||
|nearest_unigene=Hs.371036 | |nearest_unigene=Hs.371036 | ||
| − | |num_trans= | + | |num_trans=36 |
|species=human | |species=human | ||
|start=89491470 | |start=89491470 | ||
|start_of_center_position=89491475 | |start_of_center_position=89491475 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=LP764880 LP764881 AB041035 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_121800.1 | |tss_id=hg_121800.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id= |
}} | }} | ||
Revision as of 00:33, 16 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 89491475 |
|---|---|
| End of the center position in the TSS region: | 89491476 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LP764880 LP764881 AB041035 |
|---|---|
| Distance: | -4 |
| Num_trans: | 36 |
| All_trans: | LP764880:-4 LP764881:-4 AB041035:-4 ENST00000525278.1:77 ENST00000393282.2:-84 BC051371:-84 ENST00000263317.9:96 NM_001291926:96 NM_016931:96 NM_001143836:96 NR_120406:96 ENST00000525196.5:111 BC034780:111 ENST00000529343.5:114 AF254621:139 ENST00000534731.5:143 ENST00000527626.5:143 AK291830:143 AK298376:143 BC040105:153 AK311389:178 JF432404:221 KJ893751:221 CU691812:222 ENST00000531342.5:225 ENST00000375979.7:225 AF261943:225 AJ704725:225 AJ704726:225 AJ704727:225 AJ704728:225 AJ704729:225 AY288918:225 ENST00000343727.9:340 NM_001291927:493 AK298328:493 |
TATA-Box annotation
| Distance to TSS: | 89 |
|---|---|
| Nearest PromoterID: | NR_120406 |
| Entrez ID: | 50507 |
| Nearest Unigene: | Hs.371036 |
| Nearest Refseq: | NM_016931 |
| Nearest Ensembl: | ENSG00000086991 |
| Gene Name: | NADPH oxidase 4 |
| Gene Alias: | KOX|KOX-1|RENOX |
| Gene Description: | NADPH oxidase 4 |
| Gene Type: | protein-coding |
| CpG%: | 0.105 |
| GC%: | 0.746269 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
