Difference between revisions of "TSS:Hg 100555.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.055 |distance_to_tss=3 |entrez_id=101926900 |gc_percent=0.547264 |gene_alias=- |gene_description=DNAJB5 antisense RNA 1 (head to head) |gene_name=DN...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000626300.1:0 NR_109756:0 uc033cpp.2:0 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.055 | |cpg_percent=0.055 | ||
| + | |distance=0 | ||
|distance_to_tss=3 | |distance_to_tss=3 | ||
| + | |end=34989383 | ||
|entrez_id=101926900 | |entrez_id=101926900 | ||
|gc_percent=0.547264 | |gc_percent=0.547264 | ||
|gene_alias=- | |gene_alias=- | ||
|gene_description=DNAJB5 antisense RNA 1 (head to head) | |gene_description=DNAJB5 antisense RNA 1 (head to head) | ||
| − | |gene_name=DNAJB5-AS1 | + | |gene_id=101926900 |
| + | |gene_name=DNAJB5 antisense RNA 1 (head to head) | ||
| + | |gene_source=HGNC:49846 | ||
| + | |gene_symbol=DNAJB5-AS1 | ||
| + | |gene_synonyms= | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
| + | |hgnc_mgi_id=HGNC:49846 | ||
|nearest_ensembl=ENSG00000281491 | |nearest_ensembl=ENSG00000281491 | ||
|nearest_promoter_id=NR_109756 | |nearest_promoter_id=NR_109756 | ||
|nearest_refseq=NR_109756 | |nearest_refseq=NR_109756 | ||
|nearest_unigene=Hs.545814 | |nearest_unigene=Hs.545814 | ||
| + | |num_trans=3 | ||
| + | |species=human | ||
| + | |start=34989369 | ||
| + | |strand=- | ||
|tata_box="89(CAGCCTTAAAGG,-,0.00)" | |tata_box="89(CAGCCTTAAAGG,-,0.00)" | ||
| + | |transcript_name=ENST00000626300.1 NR_109756 uc033cpp.2 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_100555.1 | |tss_id=hg_100555.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 17:11, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000626300.1 NR_109756 uc033cpp.2 |
|---|---|
| Distance: | 0 |
| Num_trans: | 3 |
| All_trans: | ENST00000626300.1:0 NR_109756:0 uc033cpp.2:0 |
TATA-Box annotation
| Distance to TSS: | 3 |
|---|---|
| Nearest PromoterID: | NR_109756 |
| Entrez ID: | 101926900 |
| Nearest Unigene: | Hs.545814 |
| Nearest Refseq: | NR_109756 |
| Nearest Ensembl: | ENSG00000281491 |
| Gene Name: | DNAJB5 antisense RNA 1 (head to head) |
| Gene Alias: | - |
| Gene Description: | DNAJB5 antisense RNA 1 (head to head) |
| Gene Type: | ncRNA |
| CpG%: | 0.055 |
| GC%: | 0.547264 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "89(CAGCCTTAAAGG,-,0.00)" |
