Difference between revisions of "TSS:Hg 107643.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.02 |distance_to_tss=0 |entrez_id=5791 |gc_percent=0.457711 |gene_alias=HPTPE|PTPE|R-PTP-EPSILON |gene_description="protein tyrosine phosphatase, rec...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |PTPE= | ||
| + | |R-PTP-EPSILON= | ||
| + | |all_trans=NM_001316677:0 AK291828:0 AK300613:0 AK299498:26 ENST00000471218.5:57 uc057wur.1:57 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.02 | |cpg_percent=0.02 | ||
| + | |distance=0 | ||
|distance_to_tss=0 | |distance_to_tss=0 | ||
| + | |end=127987287 | ||
|entrez_id=5791 | |entrez_id=5791 | ||
|gc_percent=0.457711 | |gc_percent=0.457711 | ||
|gene_alias=HPTPE|PTPE|R-PTP-EPSILON | |gene_alias=HPTPE|PTPE|R-PTP-EPSILON | ||
|gene_description="protein tyrosine phosphatase, receptor type E" | |gene_description="protein tyrosine phosphatase, receptor type E" | ||
| − | |gene_name=PTPRE | + | |gene_id=5791 |
| + | |gene_name="protein tyrosine phosphatase, receptor type E" | ||
| + | |gene_source=HGNC:9669 | ||
| + | |gene_symbol=PTPRE | ||
| + | |gene_synonyms=PTPE | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:9669 | ||
|nearest_ensembl=ENSG00000132334 | |nearest_ensembl=ENSG00000132334 | ||
|nearest_promoter_id=NM_001316677 | |nearest_promoter_id=NM_001316677 | ||
|nearest_refseq=NM_006504 | |nearest_refseq=NM_006504 | ||
|nearest_unigene=Hs.127022 | |nearest_unigene=Hs.127022 | ||
| + | |num_trans=6 | ||
| + | |species=human | ||
| + | |start=127987272 | ||
| + | |strand=+ | ||
|tata_box="-33(TCCTATATAAAC,-,0.00)" | |tata_box="-33(TCCTATATAAAC,-,0.00)" | ||
| + | |transcript_name=NM_001316677 AK291828 AK300613 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_107643.1 | |tss_id=hg_107643.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=B4DUE5 P23469 | ||
}} | }} | ||
Revision as of 23:10, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | NM_001316677 AK291828 AK300613 |
|---|---|
| Distance: | 0 |
| Num_trans: | 6 |
| All_trans: | NM_001316677:0 AK291828:0 AK300613:0 AK299498:26 ENST00000471218.5:57 uc057wur.1:57 |
TATA-Box annotation
| Distance to TSS: | 0 |
|---|---|
| Nearest PromoterID: | NM_001316677 |
| Entrez ID: | 5791 |
| Nearest Unigene: | Hs.127022 |
| Nearest Refseq: | NM_006504 |
| Nearest Ensembl: | ENSG00000132334 |
| Gene Name: | "protein tyrosine phosphatase, receptor type E" |
| Gene Alias: | HPTPE |
| Gene Description: | "protein tyrosine phosphatase, receptor type E" |
| Gene Type: | protein-coding |
| CpG%: | 0.02 |
| GC%: | 0.457711 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-33(TCCTATATAAAC,-,0.00)" |
