Difference between revisions of "TSS:Hg 234463.1"
From referenceTSS
| Line 5: | Line 5: | ||
|IBMPFD3= | |IBMPFD3= | ||
|UP 1= | |UP 1= | ||
| − | |all_trans= | + | |all_trans=ENST00000552766.5:246 BC019222:251 U87954:260 ENST00000303305.11:268 NM_006191:268 AK291796:275 BC007561:314 BC001951:328 BC011718:341 BC032111:347 BC087732:347 BC072007:348 U59435:350 BC069786:375 CU675707:447 AB464072:447 DQ893446:447 DQ896751:447 KJ891745:447 |
|chr=chr12 | |chr=chr12 | ||
|cpg_percent=0.03 | |cpg_percent=0.03 | ||
| − | |distance= | + | |distance=246 |
| − | |distance_to_tss= | + | |distance_to_tss=1891 |
|end=54282624 | |end=54282624 | ||
|end_of_center_position=56104291 | |end_of_center_position=56104291 | ||
|entrez_id=3178 | |entrez_id=3178 | ||
|gc_percent=0.427861 | |gc_percent=0.427861 | ||
| − | |gene_alias=ALS19 | + | |gene_alias=ALS19{{!}}ALS20{{!}}HNRPA1{{!}}HNRPA1L3{{!}}IBMPFD3{{!}}UP 1{{!}}hnRNP A1{{!}}hnRNP-A1 |
|gene_description=heterogeneous nuclear ribonucleoprotein A1 | |gene_description=heterogeneous nuclear ribonucleoprotein A1 | ||
| − | |gene_id= | + | |gene_id=5036 |
| − | |gene_name= | + | |gene_name=proliferation-associated 2G4 |
| − | |gene_source=HGNC: | + | |gene_source=HGNC:8550 |
| − | |gene_symbol= | + | |gene_symbol=PA2G4 |
| − | |gene_synonyms= | + | |gene_synonyms= |
|gene_type=protein-coding | |gene_type=protein-coding | ||
| − | |hgnc_mgi_id=HGNC: | + | |hgnc_mgi_id=HGNC:8550 |
|hnRNP A1= | |hnRNP A1= | ||
|hnRNP-A1= | |hnRNP-A1= | ||
| Line 29: | Line 29: | ||
|nearest_refseq=NM_002136 | |nearest_refseq=NM_002136 | ||
|nearest_unigene=Hs.546261 | |nearest_unigene=Hs.546261 | ||
| − | |num_trans= | + | |num_trans=19 |
|species=human | |species=human | ||
|start=54282610 | |start=54282610 | ||
|start_of_center_position=56104290 | |start_of_center_position=56104290 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=ENST00000552766.5 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_234463.1 | |tss_id=hg_234463.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=F8VR77 |
}} | }} | ||
Revision as of 13:11, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 56104290 |
|---|---|
| End of the center position in the TSS region: | 56104291 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000552766.5 |
|---|---|
| Distance: | 246 |
| Num_trans: | 19 |
| All_trans: | ENST00000552766.5:246 BC019222:251 U87954:260 ENST00000303305.11:268 NM_006191:268 AK291796:275 BC007561:314 BC001951:328 BC011718:341 BC032111:347 BC087732:347 BC072007:348 U59435:350 BC069786:375 CU675707:447 AB464072:447 DQ893446:447 DQ896751:447 KJ891745:447 |
TATA-Box annotation
| Distance to TSS: | 1891 |
|---|---|
| Nearest PromoterID: | NM_002136 |
| Entrez ID: | 3178 |
| Nearest Unigene: | Hs.546261 |
| Nearest Refseq: | NM_002136 |
| Nearest Ensembl: | ENSG00000135486 |
| Gene Name: | proliferation-associated 2G4 |
| Gene Alias: | ALS19|ALS20|HNRPA1|HNRPA1L3|IBMPFD3|UP 1|hnRNP A1|hnRNP-A1 |
| Gene Description: | heterogeneous nuclear ribonucleoprotein A1 |
| Gene Type: | protein-coding |
| CpG%: | 0.03 |
| GC%: | 0.427861 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
