Difference between revisions of "TSS:Hg 46503.1"
From referenceTSS
| Line 3: | Line 3: | ||
|PDEB= | |PDEB= | ||
|RP40= | |RP40= | ||
| − | |all_trans=ENST00000474251.5:15 ENST00000487902.5 | + | |all_trans=NM_001379247:0 NM_001379246:0 ENST00000474251.5:15 ENST00000487902.5:15 ENST00000476034.5:303 AK308789:303 ENST00000465426.5:-380 |
|chr=chr4 | |chr=chr4 | ||
|cpg_percent=0.03 | |cpg_percent=0.03 | ||
| − | |distance= | + | |distance=0 |
|distance_to_tss=-1223 | |distance_to_tss=-1223 | ||
|end=651970 | |end=651970 | ||
| Line 12: | Line 12: | ||
|entrez_id=5158 | |entrez_id=5158 | ||
|gc_percent=0.646766 | |gc_percent=0.646766 | ||
| − | |gene_alias=CSNB3 | + | |gene_alias=CSNB3{{!}}CSNBAD2{{!}}GMP-PDEbeta{{!}}PDEB{{!}}RP40{{!}}rd1 |
|gene_description=phosphodiesterase 6B | |gene_description=phosphodiesterase 6B | ||
|gene_id=5158 | |gene_id=5158 | ||
| Line 22: | Line 22: | ||
|hgnc_mgi_id=HGNC:8786 | |hgnc_mgi_id=HGNC:8786 | ||
|nearest_ensembl=ENSG00000133256 | |nearest_ensembl=ENSG00000133256 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001350154 |
|nearest_refseq=NM_000283 | |nearest_refseq=NM_000283 | ||
|nearest_unigene=Hs.623810 | |nearest_unigene=Hs.623810 | ||
| − | |num_trans= | + | |num_trans=7 |
|rd1= | |rd1= | ||
|species=human | |species=human | ||
| Line 31: | Line 31: | ||
|start_of_center_position=651954 | |start_of_center_position=651954 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=NM_001379247 NM_001379246 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_46503.1 | |tss_id=hg_46503.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id= |
}} | }} | ||
Revision as of 01:30, 18 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 651954 |
|---|---|
| End of the center position in the TSS region: | 651955 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | NM_001379247 NM_001379246 |
|---|---|
| Distance: | 0 |
| Num_trans: | 7 |
| All_trans: | NM_001379247:0 NM_001379246:0 ENST00000474251.5:15 ENST00000487902.5:15 ENST00000476034.5:303 AK308789:303 ENST00000465426.5:-380 |
TATA-Box annotation
| Distance to TSS: | -1223 |
|---|---|
| Nearest PromoterID: | NM_001350154 |
| Entrez ID: | 5158 |
| Nearest Unigene: | Hs.623810 |
| Nearest Refseq: | NM_000283 |
| Nearest Ensembl: | ENSG00000133256 |
| Gene Name: | phosphodiesterase 6B |
| Gene Alias: | CSNB3|CSNBAD2|GMP-PDEbeta|PDEB|RP40|rd1 |
| Gene Description: | phosphodiesterase 6B |
| Gene Type: | protein-coding |
| CpG%: | 0.03 |
| GC%: | 0.646766 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
