Difference between revisions of "TSS:Hg 134456.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|PABPL3= | |PABPL3= | ||
| − | |all_trans=NM_030979:0 AL136900:0 AK313336:0 BC045608:0 BC027617:0 AF132026:0 DQ895297:22 DQ892103:22 KJ897288:22 | + | |all_trans=ENST00000281589.5:0 NM_030979:0 AL136900:0 AK313336:0 BC045608:0 BC027617:0 AF132026:0 DQ895297:22 DQ892103:22 KJ897288:22 |
|chr=chr13 | |chr=chr13 | ||
|cpg_percent=0.095 | |cpg_percent=0.095 | ||
| Line 10: | Line 10: | ||
|entrez_id=5042 | |entrez_id=5042 | ||
|gc_percent=0.656716 | |gc_percent=0.656716 | ||
| − | |gene_alias=PABP3 | + | |gene_alias=PABP3{{!}}PABPL3{{!}}tPABP |
|gene_description=poly(A) binding protein cytoplasmic 3 | |gene_description=poly(A) binding protein cytoplasmic 3 | ||
|gene_id=5042 | |gene_id=5042 | ||
| − | |gene_name= | + | |gene_name=poly(A) binding protein cytoplasmic 3 |
|gene_source=HGNC:8556 | |gene_source=HGNC:8556 | ||
|gene_symbol=PABPC3 | |gene_symbol=PABPC3 | ||
| Line 23: | Line 23: | ||
|nearest_refseq=NM_030979 | |nearest_refseq=NM_030979 | ||
|nearest_unigene=Hs.458280 | |nearest_unigene=Hs.458280 | ||
| − | |num_trans= | + | |num_trans=10 |
|species=human | |species=human | ||
|start=25096130 | |start=25096130 | ||
| Line 29: | Line 29: | ||
|strand=+ | |strand=+ | ||
|tPABP= | |tPABP= | ||
| − | |transcript_name=NM_030979 AL136900 AK313336 BC045608 BC027617 AF132026 | + | |transcript_name=ENST00000281589.5 NM_030979 AL136900 AK313336 BC045608 BC027617 AF132026 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_134456.1 | |tss_id=hg_134456.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=Q3ZCS4 Q9H361 | + | |uniprot_id=Q3ZCS4 Q5VX58 Q9H361 |
}} | }} | ||
Revision as of 05:29, 16 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 25096153 |
|---|---|
| End of the center position in the TSS region: | 25096154 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000281589.5 NM_030979 AL136900 AK313336 BC045608 BC027617 AF132026 |
|---|---|
| Distance: | 0 |
| Num_trans: | 10 |
| All_trans: | ENST00000281589.5:0 NM_030979:0 AL136900:0 AK313336:0 BC045608:0 BC027617:0 AF132026:0 DQ895297:22 DQ892103:22 KJ897288:22 |
TATA-Box annotation
| Distance to TSS: | 16 |
|---|---|
| Nearest PromoterID: | NM_030979 |
| Entrez ID: | 5042 |
| Nearest Unigene: | Hs.458280 |
| Nearest Refseq: | NM_030979 |
| Nearest Ensembl: | ENSG00000151846 |
| Gene Name: | poly(A) binding protein cytoplasmic 3 |
| Gene Alias: | PABP3|PABPL3|tPABP |
| Gene Description: | poly(A) binding protein cytoplasmic 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.095 |
| GC%: | 0.656716 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
