Difference between revisions of "TSS:Hg 52017.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=S62907:12 ENST00000540012.5:-25 ENST00000381620.9:-114 NM_000807:-114 NM_001377152:-114 NM_001377144:-114 NM_001286827:-114 ENST00000630416.2:152 ENST00000514193.5:152 AK293466:152 AB209295:185 NM_001377154:-286 NM_001377146:-286 NM_001377145:-286 NM_001377155:-286 ENST00000515082.5:-390 ENST00000507460.1:390 BC022488:-390 AK307128:390 |
|chr=chr4 | |chr=chr4 | ||
|cpg_percent=0.09 | |cpg_percent=0.09 | ||
|distance=12 | |distance=12 | ||
| − | |distance_to_tss= | + | |distance_to_tss=151 |
|end=46390014 | |end=46390014 | ||
|end_of_center_position=46389977 | |end_of_center_position=46389977 | ||
| Line 12: | Line 12: | ||
|gene_description=gamma-aminobutyric acid type A receptor alpha2 subunit | |gene_description=gamma-aminobutyric acid type A receptor alpha2 subunit | ||
|gene_id=2555 | |gene_id=2555 | ||
| − | |gene_name=gamma-aminobutyric acid type A receptor alpha2 | + | |gene_name=gamma-aminobutyric acid type A receptor subunit alpha2 |
|gene_source=HGNC:4076 | |gene_source=HGNC:4076 | ||
|gene_symbol=GABRA2 | |gene_symbol=GABRA2 | ||
| Line 27: | Line 27: | ||
|start_of_center_position=46389976 | |start_of_center_position=46389976 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=S62907 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_52017.1 | |tss_id=hg_52017.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id= |
}} | }} | ||
Revision as of 03:39, 18 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 46389976 |
|---|---|
| End of the center position in the TSS region: | 46389977 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | S62907 |
|---|---|
| Distance: | 12 |
| Num_trans: | 19 |
| All_trans: | S62907:12 ENST00000540012.5:-25 ENST00000381620.9:-114 NM_000807:-114 NM_001377152:-114 NM_001377144:-114 NM_001286827:-114 ENST00000630416.2:152 ENST00000514193.5:152 AK293466:152 AB209295:185 NM_001377154:-286 NM_001377146:-286 NM_001377145:-286 NM_001377155:-286 ENST00000515082.5:-390 ENST00000507460.1:390 BC022488:-390 AK307128:390 |
TATA-Box annotation
| Distance to TSS: | 151 |
|---|---|
| Nearest PromoterID: | NM_001286827 |
| Entrez ID: | 2555 |
| Nearest Unigene: | Hs.48372 |
| Nearest Refseq: | NM_000807 |
| Nearest Ensembl: | ENSG00000151834 |
| Gene Name: | gamma-aminobutyric acid type A receptor subunit alpha2 |
| Gene Alias: | - |
| Gene Description: | gamma-aminobutyric acid type A receptor alpha2 subunit |
| Gene Type: | protein-coding |
| CpG%: | 0.09 |
| GC%: | 0.676617 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
