Difference between revisions of "TSS:Hg 165186.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENST00000394821.2:0 uc060dmq.1:0 AK313166:0 AK308014:0 ENST00000261707.7:-269 NM_001045:-269 uc002hey.6:-269 ENST00000401766.6:-303 uc060dmn.1:-303 |chr...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |5-HTTLPR= | ||
| + | |5HTT= | ||
| + | |HTT= | ||
| + | |OCD1= | ||
| + | |SERT= | ||
| + | |SERT1= | ||
|all_trans=ENST00000394821.2:0 uc060dmq.1:0 AK313166:0 AK308014:0 ENST00000261707.7:-269 NM_001045:-269 uc002hey.6:-269 ENST00000401766.6:-303 uc060dmn.1:-303 | |all_trans=ENST00000394821.2:0 uc060dmq.1:0 AK313166:0 AK308014:0 ENST00000261707.7:-269 NM_001045:-269 uc002hey.6:-269 ENST00000401766.6:-303 uc060dmn.1:-303 | ||
|chr=chr17 | |chr=chr17 | ||
| Line 6: | Line 12: | ||
|distance_to_tss=270 | |distance_to_tss=270 | ||
|end=30235699 | |end=30235699 | ||
| + | |end_of_center_position=30235698 | ||
|entrez_id=6532 | |entrez_id=6532 | ||
|gc_percent=0.696517 | |gc_percent=0.696517 | ||
| − | |gene_alias=5-HTT | + | |gene_alias=5-HTT |
|gene_description=solute carrier family 6 member 4 | |gene_description=solute carrier family 6 member 4 | ||
|gene_id=6532 | |gene_id=6532 | ||
| Line 16: | Line 23: | ||
|gene_synonyms=5-HTT SERT1 | |gene_synonyms=5-HTT SERT1 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hSERT= | ||
|hgnc_mgi_id=HGNC:11050 | |hgnc_mgi_id=HGNC:11050 | ||
|nearest_ensembl=ENSG00000108576 | |nearest_ensembl=ENSG00000108576 | ||
| Line 24: | Line 32: | ||
|species=human | |species=human | ||
|start=30235696 | |start=30235696 | ||
| + | |start_of_center_position=30235697 | ||
|strand=- | |strand=- | ||
|transcript_name=ENST00000394821.2 uc060dmq.1 AK313166 AK308014 | |transcript_name=ENST00000394821.2 uc060dmq.1 AK313166 AK308014 | ||
Revision as of 01:20, 15 May 2019
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 30235697 |
|---|---|
| End of the center position in the TSS region: | 30235698 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000394821.2 uc060dmq.1 AK313166 AK308014 |
|---|---|
| Distance: | 0 |
| Num_trans: | 9 |
| All_trans: | ENST00000394821.2:0 uc060dmq.1:0 AK313166:0 AK308014:0 ENST00000261707.7:-269 NM_001045:-269 uc002hey.6:-269 ENST00000401766.6:-303 uc060dmn.1:-303 |
TATA-Box annotation
| Distance to TSS: | 270 |
|---|---|
| Nearest PromoterID: | NM_001045 |
| Entrez ID: | 6532 |
| Nearest Unigene: | Hs.29792 |
| Nearest Refseq: | NM_001045 |
| Nearest Ensembl: | ENSG00000108576 |
| Gene Name: | solute carrier family 6 member 4 |
| Gene Alias: | 5-HTT |
| Gene Description: | solute carrier family 6 member 4 |
| Gene Type: | protein-coding |
| CpG%: | 0.11 |
| GC%: | 0.696517 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
