Difference between revisions of "TSS:Hg 57636.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000506817.1 | + | |all_trans=ENST00000506817.1:68 BC047884:68 BC020231:99 ENST00000506959.5:-155 BC013169:244 ENST00000379982.8:258 NM_014899:258 BC041337:261 AB020685:270 AK290034:295 |
|chr=chr5 | |chr=chr5 | ||
|cpg_percent=0.08 | |cpg_percent=0.08 | ||
|distance=68 | |distance=68 | ||
| − | |distance_to_tss=- | + | |distance_to_tss=-284 |
|end=95731078 | |end=95731078 | ||
|end_of_center_position=95731053 | |end_of_center_position=95731053 | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NM_014899 | |nearest_refseq=NM_014899 | ||
|nearest_unigene=Hs.445030 | |nearest_unigene=Hs.445030 | ||
| − | |num_trans= | + | |num_trans=10 |
|species=human | |species=human | ||
|start=95731026 | |start=95731026 | ||
|start_of_center_position=95731052 | |start_of_center_position=95731052 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000506817.1 | + | |transcript_name=ENST00000506817.1 BC047884 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_57636.1 | |tss_id=hg_57636.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=D6RG10 | + | |uniprot_id=D6RG10 |
}} | }} | ||
Revision as of 05:50, 18 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 95731052 |
|---|---|
| End of the center position in the TSS region: | 95731053 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000506817.1 BC047884 |
|---|---|
| Distance: | 68 |
| Num_trans: | 10 |
| All_trans: | ENST00000506817.1:68 BC047884:68 BC020231:99 ENST00000506959.5:-155 BC013169:244 ENST00000379982.8:258 NM_014899:258 BC041337:261 AB020685:270 AK290034:295 |
TATA-Box annotation
| Distance to TSS: | -284 |
|---|---|
| Nearest PromoterID: | NM_014899 |
| Entrez ID: | 22836 |
| Nearest Unigene: | Hs.445030 |
| Nearest Refseq: | NM_014899 |
| Nearest Ensembl: | ENSG00000164292 |
| Gene Name: | Rho related BTB domain containing 3 |
| Gene Alias: | - |
| Gene Description: | Rho related BTB domain containing 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.08 |
| GC%: | 0.61194 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
