Difference between revisions of "TSS:Hg 166014.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENST00000311208.12:0 ENST00000491673.1:0 uc002hxh.3:0 uc060fci.1:0 AK095342:0 AK304373:0 BC000159:9 BC056421:9 BC011901:11 X62571:11 BC072019:13 ENST000...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |CK-17= | ||
| + | |K17= | ||
| + | |PC= | ||
| + | |PC2= | ||
| + | |PCHC1= | ||
|all_trans=ENST00000311208.12:0 ENST00000491673.1:0 uc002hxh.3:0 uc060fci.1:0 AK095342:0 AK304373:0 BC000159:9 BC056421:9 BC011901:11 X62571:11 BC072019:13 ENST00000540235.5:27 uc060fcd.1:27 BC072018:27 NM_000422:-47 DQ891101:54 DQ894283:54 AB528302:57 ENST00000577817.3:104 uc060fcg.1:104 ENST00000463128.5:-259 uc060fcf.1:-259 CU687210:264 ENST00000493253.5:272 uc060fce.1:272 BX647923:272 EF608068:359 | |all_trans=ENST00000311208.12:0 ENST00000491673.1:0 uc002hxh.3:0 uc060fci.1:0 AK095342:0 AK304373:0 BC000159:9 BC056421:9 BC011901:11 X62571:11 BC072019:13 ENST00000540235.5:27 uc060fcd.1:27 BC072018:27 NM_000422:-47 DQ891101:54 DQ894283:54 AB528302:57 ENST00000577817.3:104 uc060fcg.1:104 ENST00000463128.5:-259 uc060fcf.1:-259 CU687210:264 ENST00000493253.5:272 uc060fce.1:272 BX647923:272 EF608068:359 | ||
|chr=chr17 | |chr=chr17 | ||
| Line 6: | Line 11: | ||
|distance_to_tss=55 | |distance_to_tss=55 | ||
|end=41624583 | |end=41624583 | ||
| + | |end_of_center_position=41624576 | ||
|entrez_id=3872 | |entrez_id=3872 | ||
|gc_percent=0.616915 | |gc_percent=0.616915 | ||
| − | |gene_alias=39.1 | + | |gene_alias=39.1 |
|gene_description=keratin 17 | |gene_description=keratin 17 | ||
|gene_id=3872 | |gene_id=3872 | ||
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|species=human | |species=human | ||
|start=41624567 | |start=41624567 | ||
| + | |start_of_center_position=41624575 | ||
|strand=- | |strand=- | ||
|tata_box="-35(GCCTATAAAGGA,+,0.00),-35(GCCTATAAAGGA,-,0.00)" | |tata_box="-35(GCCTATAAAGGA,+,0.00),-35(GCCTATAAAGGA,-,0.00)" | ||
Revision as of 02:55, 15 May 2019
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 41624575 |
|---|---|
| End of the center position in the TSS region: | 41624576 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000311208.12 ENST00000491673.1 uc002hxh.3 uc060fci.1 AK095342 AK304373 |
|---|---|
| Distance: | 0 |
| Num_trans: | 27 |
| All_trans: | ENST00000311208.12:0 ENST00000491673.1:0 uc002hxh.3:0 uc060fci.1:0 AK095342:0 AK304373:0 BC000159:9 BC056421:9 BC011901:11 X62571:11 BC072019:13 ENST00000540235.5:27 uc060fcd.1:27 BC072018:27 NM_000422:-47 DQ891101:54 DQ894283:54 AB528302:57 ENST00000577817.3:104 uc060fcg.1:104 ENST00000463128.5:-259 uc060fcf.1:-259 CU687210:264 ENST00000493253.5:272 uc060fce.1:272 BX647923:272 EF608068:359 |
TATA-Box annotation
| Distance to TSS: | 55 |
|---|---|
| Nearest PromoterID: | NM_000422 |
| Entrez ID: | 3872 |
| Nearest Unigene: | Hs.2785 |
| Nearest Refseq: | NM_000422 |
| Nearest Ensembl: | ENSG00000128422 |
| Gene Name: | keratin 17 |
| Gene Alias: | 39.1 |
| Gene Description: | keratin 17 |
| Gene Type: | protein-coding |
| CpG%: | 0.04 |
| GC%: | 0.616915 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-35(GCCTATAAAGGA,+,0.00),-35(GCCTATAAAGGA,-,0.00)" |
