Difference between revisions of "TSS:Mm 146760.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=AB008811:35 M31131:35 uc008edx.2:-199 AK032826:277 BC022107:297 ENSMUST00000152779.1:303 AK087418:303 ENSMUST00000025166.13:-396 NM_007664:-396 AK146981...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |N-CAD= | ||
| + | |Ncad= | ||
|all_trans=AB008811:35 M31131:35 uc008edx.2:-199 AK032826:277 BC022107:297 ENSMUST00000152779.1:303 AK087418:303 ENSMUST00000025166.13:-396 NM_007664:-396 AK146981:-396 | |all_trans=AB008811:35 M31131:35 uc008edx.2:-199 AK032826:277 BC022107:297 ENSMUST00000152779.1:303 AK087418:303 ENSMUST00000025166.13:-396 NM_007664:-396 AK146981:-396 | ||
|chr=chr18 | |chr=chr18 | ||
| Line 6: | Line 8: | ||
|distance_to_tss=439 | |distance_to_tss=439 | ||
|end=16808850 | |end=16808850 | ||
| + | |end_of_center_position=16808808 | ||
|entrez_id=12558 | |entrez_id=12558 | ||
|gc_percent=0.706468 | |gc_percent=0.706468 | ||
| − | |gene_alias=CDHN | + | |gene_alias=CDHN |
|gene_description=cadherin 2 | |gene_description=cadherin 2 | ||
|gene_id=12558 | |gene_id=12558 | ||
| Line 24: | Line 27: | ||
|species=mouse | |species=mouse | ||
|start=16808764 | |start=16808764 | ||
| + | |start_of_center_position=16808807 | ||
|strand=- | |strand=- | ||
|transcript_name=AB008811 M31131 | |transcript_name=AB008811 M31131 | ||
Revision as of 15:06, 14 May 2019
Basic information about the TSS
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| Start of the center position in the TSS region: | 16808807 |
|---|---|
| End of the center position in the TSS region: | 16808808 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | AB008811 M31131 |
|---|---|
| Distance: | 35 |
| Num_trans: | 10 |
| All_trans: | AB008811:35 M31131:35 uc008edx.2:-199 AK032826:277 BC022107:297 ENSMUST00000152779.1:303 AK087418:303 ENSMUST00000025166.13:-396 NM_007664:-396 AK146981:-396 |
TATA-Box annotation
| Distance to TSS: | 439 |
|---|---|
| Nearest PromoterID: | NM_007664 |
| Entrez ID: | 12558 |
| Nearest Unigene: | Mm.257437 |
| Nearest Refseq: | NM_007664 |
| Nearest Ensembl: | ENSMUSG00000024304 |
| Gene Name: | cadherin 2 |
| Gene Alias: | CDHN |
| Gene Description: | cadherin 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.1 |
| GC%: | 0.706468 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
