Difference between revisions of "TSS:Mm 148765.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=BC019440:-310 AK164029:-317 NM_013859:-324 uc008ggv.1:-324 AK086863:-324 AF119498:-334 ENSMUST00000162726.4:-339 BC092256:-339 |chr=chr19 |cpg_percent=0...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |Fon= | ||
| + | |ORF6= | ||
| + | |Znhit2-ps= | ||
|all_trans=BC019440:-310 AK164029:-317 NM_013859:-324 uc008ggv.1:-324 AK086863:-324 AF119498:-334 ENSMUST00000162726.4:-339 BC092256:-339 | |all_trans=BC019440:-310 AK164029:-317 NM_013859:-324 uc008ggv.1:-324 AK086863:-324 AF119498:-334 ENSMUST00000162726.4:-339 BC092256:-339 | ||
|chr=chr19 | |chr=chr19 | ||
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|distance_to_tss=339 | |distance_to_tss=339 | ||
|end=6061562 | |end=6061562 | ||
| + | |end_of_center_position=6061547 | ||
|entrez_id=29805 | |entrez_id=29805 | ||
|gc_percent=0.726368 | |gc_percent=0.726368 | ||
| − | |gene_alias=C11orf5 | + | |gene_alias=C11orf5 |
|gene_description="zinc finger, HIT domain containing 2" | |gene_description="zinc finger, HIT domain containing 2" | ||
|gene_id=29805 | |gene_id=29805 | ||
| Line 24: | Line 28: | ||
|species=mouse | |species=mouse | ||
|start=6061530 | |start=6061530 | ||
| + | |start_of_center_position=6061546 | ||
|strand=+ | |strand=+ | ||
|transcript_name=BC019440 | |transcript_name=BC019440 | ||
Revision as of 19:40, 14 May 2019
Basic information about the TSS
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| Start of the center position in the TSS region: | 6061546 |
|---|---|
| End of the center position in the TSS region: | 6061547 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | BC019440 |
|---|---|
| Distance: | -310 |
| Num_trans: | 8 |
| All_trans: | BC019440:-310 AK164029:-317 NM_013859:-324 uc008ggv.1:-324 AK086863:-324 AF119498:-334 ENSMUST00000162726.4:-339 BC092256:-339 |
TATA-Box annotation
| Distance to TSS: | 339 |
|---|---|
| Nearest PromoterID: | NM_013859 |
| Entrez ID: | 29805 |
| Nearest Unigene: | Mm.2310 |
| Nearest Refseq: | NM_013859 |
| Nearest Ensembl: | ENSMUSG00000075227 |
| Gene Name: | "zinc finger, HIT domain containing 2" |
| Gene Alias: | C11orf5 |
| Gene Description: | "zinc finger, HIT domain containing 2" |
| Gene Type: | protein-coding |
| CpG%: | 0.135 |
| GC%: | 0.726368 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
