Difference between revisions of "TSS:Hg 154459.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENST00000569578.5:0 ENST00000421602.6:0 ENST00000561779.5:0 ENST00000565430.5:0 ENST00000567063.5:0 ENST00000566041.5:0 ENST00000566061.5:0 uc059vbe.1:0...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |SMAP-8= | ||
| + | |SMAP8= | ||
|all_trans=ENST00000569578.5:0 ENST00000421602.6:0 ENST00000561779.5:0 ENST00000565430.5:0 ENST00000567063.5:0 ENST00000566041.5:0 ENST00000566061.5:0 uc059vbe.1:0 uc059vbf.1:0 uc059vbg.1:0 uc059vbh.1:0 uc059vbi.1:0 uc059vbj.1:0 uc059vbk.1:0 AK126729:0 AK126574:0 ENST00000566065.5:-9 ENST00000564867.5:-9 ENST00000567454.5:-9 uc059vbb.1:-9 uc059vbc.1:-9 uc059vbd.1:-9 CR936733:73 NM_001130487:-201 ENST00000394282.8:-267 uc002enm.4:-267 ENST00000565434.5:442 uc059vbl.1:442 ENST00000394279.6:490 NM_022910:490 uc010vif.3:490 | |all_trans=ENST00000569578.5:0 ENST00000421602.6:0 ENST00000561779.5:0 ENST00000565430.5:0 ENST00000567063.5:0 ENST00000566041.5:0 ENST00000566061.5:0 uc059vbe.1:0 uc059vbf.1:0 uc059vbg.1:0 uc059vbh.1:0 uc059vbi.1:0 uc059vbj.1:0 uc059vbk.1:0 AK126729:0 AK126574:0 ENST00000566065.5:-9 ENST00000564867.5:-9 ENST00000567454.5:-9 uc059vbb.1:-9 uc059vbc.1:-9 uc059vbd.1:-9 CR936733:73 NM_001130487:-201 ENST00000394282.8:-267 uc002enm.4:-267 ENST00000565434.5:442 uc059vbl.1:442 ENST00000394279.6:490 NM_022910:490 uc010vif.3:490 | ||
|chr=chr16 | |chr=chr16 | ||
| Line 6: | Line 8: | ||
|distance_to_tss=221 | |distance_to_tss=221 | ||
|end=58464332 | |end=58464332 | ||
| + | |end_of_center_position=58464312 | ||
|entrez_id=65009 | |entrez_id=65009 | ||
|gc_percent=0.716418 | |gc_percent=0.716418 | ||
| − | |gene_alias=BDM1 | + | |gene_alias=BDM1 |
|gene_description=NDRG family member 4 | |gene_description=NDRG family member 4 | ||
|gene_id=65009 | |gene_id=65009 | ||
| Line 24: | Line 27: | ||
|species=human | |species=human | ||
|start=58464290 | |start=58464290 | ||
| + | |start_of_center_position=58464311 | ||
|strand=+ | |strand=+ | ||
|tata_box="-74(TTTTTTAAACCG,+,0.00)" | |tata_box="-74(TTTTTTAAACCG,+,0.00)" | ||
Revision as of 19:58, 14 May 2019
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 58464311 |
|---|---|
| End of the center position in the TSS region: | 58464312 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000569578.5 ENST00000421602.6 ENST00000561779.5 ENST00000565430.5 ENST00000567063.5 ENST00000566041.5 ENST00000566061.5 uc059vbe.1 uc059vbf.1 uc059vbg.1 uc059vbh.1 uc059vbi.1 uc059vbj.1 uc059vbk.1 AK126729 AK126574 |
|---|---|
| Distance: | 0 |
| Num_trans: | 31 |
| All_trans: | ENST00000569578.5:0 ENST00000421602.6:0 ENST00000561779.5:0 ENST00000565430.5:0 ENST00000567063.5:0 ENST00000566041.5:0 ENST00000566061.5:0 uc059vbe.1:0 uc059vbf.1:0 uc059vbg.1:0 uc059vbh.1:0 uc059vbi.1:0 uc059vbj.1:0 uc059vbk.1:0 AK126729:0 AK126574:0 ENST00000566065.5:-9 ENST00000564867.5:-9 ENST00000567454.5:-9 uc059vbb.1:-9 uc059vbc.1:-9 uc059vbd.1:-9 CR936733:73 NM_001130487:-201 ENST00000394282.8:-267 uc002enm.4:-267 ENST00000565434.5:442 uc059vbl.1:442 ENST00000394279.6:490 NM_022910:490 uc010vif.3:490 |
TATA-Box annotation
| Distance to TSS: | 221 |
|---|---|
| Nearest PromoterID: | NM_001130487 |
| Entrez ID: | 65009 |
| Nearest Unigene: | Hs.322430 |
| Nearest Refseq: | NM_020465 |
| Nearest Ensembl: | ENSG00000103034 |
| Gene Name: | NDRG family member 4 |
| Gene Alias: | BDM1 |
| Gene Description: | NDRG family member 4 |
| Gene Type: | protein-coding |
| CpG%: | 0.13 |
| GC%: | 0.716418 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-74(TTTTTTAAACCG,+,0.00)" |
