Difference between revisions of "TSS:Hg 236611.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENST00000394821.2:120 uc060dmq.1:120 AK308014:120 AK313166:121 ENST00000261707.7:-150 NM_001045:-150 uc002hey.6:-150 ENST00000401766.6:-184 uc060dmn.1:-...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |5-HTTLPR= | ||
| + | |5HTT= | ||
| + | |HTT= | ||
| + | |OCD1= | ||
| + | |SERT= | ||
| + | |SERT1= | ||
|all_trans=ENST00000394821.2:120 uc060dmq.1:120 AK308014:120 AK313166:121 ENST00000261707.7:-150 NM_001045:-150 uc002hey.6:-150 ENST00000401766.6:-184 uc060dmn.1:-184 | |all_trans=ENST00000394821.2:120 uc060dmq.1:120 AK308014:120 AK313166:121 ENST00000261707.7:-150 NM_001045:-150 uc002hey.6:-150 ENST00000401766.6:-184 uc060dmn.1:-184 | ||
|chr=chr17 | |chr=chr17 | ||
| Line 6: | Line 12: | ||
|distance_to_tss=150 | |distance_to_tss=150 | ||
|end=30235818 | |end=30235818 | ||
| + | |end_of_center_position=41624108 | ||
|entrez_id=6532 | |entrez_id=6532 | ||
|gc_percent=0.641791 | |gc_percent=0.641791 | ||
| − | |gene_alias=5-HTT | + | |gene_alias=5-HTT |
|gene_description=solute carrier family 6 member 4 | |gene_description=solute carrier family 6 member 4 | ||
|gene_id=6532 | |gene_id=6532 | ||
| Line 16: | Line 23: | ||
|gene_synonyms=5-HTT SERT1 | |gene_synonyms=5-HTT SERT1 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hSERT= | ||
|hgnc_mgi_id=HGNC:11050 | |hgnc_mgi_id=HGNC:11050 | ||
|nearest_ensembl=ENSG00000108576 | |nearest_ensembl=ENSG00000108576 | ||
| Line 24: | Line 32: | ||
|species=human | |species=human | ||
|start=30235817 | |start=30235817 | ||
| + | |start_of_center_position=41624107 | ||
|strand=- | |strand=- | ||
|transcript_name=ENST00000394821.2 uc060dmq.1 AK308014 | |transcript_name=ENST00000394821.2 uc060dmq.1 AK308014 | ||
Revision as of 02:54, 15 May 2019
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 41624107 |
|---|---|
| End of the center position in the TSS region: | 41624108 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000394821.2 uc060dmq.1 AK308014 |
|---|---|
| Distance: | 120 |
| Num_trans: | 9 |
| All_trans: | ENST00000394821.2:120 uc060dmq.1:120 AK308014:120 AK313166:121 ENST00000261707.7:-150 NM_001045:-150 uc002hey.6:-150 ENST00000401766.6:-184 uc060dmn.1:-184 |
TATA-Box annotation
| Distance to TSS: | 150 |
|---|---|
| Nearest PromoterID: | NM_001045 |
| Entrez ID: | 6532 |
| Nearest Unigene: | Hs.29792 |
| Nearest Refseq: | NM_001045 |
| Nearest Ensembl: | ENSG00000108576 |
| Gene Name: | solute carrier family 6 member 4 |
| Gene Alias: | 5-HTT |
| Gene Description: | solute carrier family 6 member 4 |
| Gene Type: | protein-coding |
| CpG%: | 0.115 |
| GC%: | 0.641791 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
