Difference between revisions of "TSS:Hg 168280.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=AK021780:0 ENST00000397625.8:-3 uc002jso.4:-3 BC047003:-3 AK314541:26 ENST00000585429.1:61 uc060kmf.1:61 AB011157:83 BC066654:83 AB073711:89 KJ893343:89...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |PTDSR= | ||
| + | |PTDSR1= | ||
|all_trans=AK021780:0 ENST00000397625.8:-3 uc002jso.4:-3 BC047003:-3 AK314541:26 ENST00000585429.1:61 uc060kmf.1:61 AB011157:83 BC066654:83 AB073711:89 KJ893343:89 AB383913:90 ENST00000445478.6:-92 uc002jsn.2:-92 AK294816:-92 ENST00000542934.5:-197 ENST00000303996.10:-197 uc060kmc.1:-197 uc060kmd.1:-197 EF527406:-197 EF527407:-197 ENST00000617192.4:-212 NM_001081461:-212 NM_015167:-212 uc060kmb.1:-212 | |all_trans=AK021780:0 ENST00000397625.8:-3 uc002jso.4:-3 BC047003:-3 AK314541:26 ENST00000585429.1:61 uc060kmf.1:61 AB011157:83 BC066654:83 AB073711:89 KJ893343:89 AB383913:90 ENST00000445478.6:-92 uc002jsn.2:-92 AK294816:-92 ENST00000542934.5:-197 ENST00000303996.10:-197 uc060kmc.1:-197 uc060kmd.1:-197 EF527406:-197 EF527407:-197 ENST00000617192.4:-212 NM_001081461:-212 NM_015167:-212 uc060kmb.1:-212 | ||
|chr=chr17 | |chr=chr17 | ||
| Line 6: | Line 8: | ||
|distance_to_tss=224 | |distance_to_tss=224 | ||
|end=76726587 | |end=76726587 | ||
| + | |end_of_center_position=76726576 | ||
|entrez_id=23210 | |entrez_id=23210 | ||
|gc_percent=0.681592 | |gc_percent=0.681592 | ||
| − | |gene_alias=PSR | + | |gene_alias=PSR |
|gene_description=arginine demethylase and lysine hydroxylase | |gene_description=arginine demethylase and lysine hydroxylase | ||
|gene_id=23210 | |gene_id=23210 | ||
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|species=human | |species=human | ||
|start=76726563 | |start=76726563 | ||
| + | |start_of_center_position=76726575 | ||
|strand=- | |strand=- | ||
|tata_box="-38(CGACTTTAAAGG,-,0.00),-37(GACTTTAAAGGC,-,0.00),-36(ACTTTAAAGGCG,+,0.00)" | |tata_box="-38(CGACTTTAAAGG,-,0.00),-37(GACTTTAAAGGC,-,0.00),-36(ACTTTAAAGGCG,+,0.00)" | ||
Revision as of 07:18, 15 May 2019
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 76726575 |
|---|---|
| End of the center position in the TSS region: | 76726576 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AK021780 |
|---|---|
| Distance: | 0 |
| Num_trans: | 25 |
| All_trans: | AK021780:0 ENST00000397625.8:-3 uc002jso.4:-3 BC047003:-3 AK314541:26 ENST00000585429.1:61 uc060kmf.1:61 AB011157:83 BC066654:83 AB073711:89 KJ893343:89 AB383913:90 ENST00000445478.6:-92 uc002jsn.2:-92 AK294816:-92 ENST00000542934.5:-197 ENST00000303996.10:-197 uc060kmc.1:-197 uc060kmd.1:-197 EF527406:-197 EF527407:-197 ENST00000617192.4:-212 NM_001081461:-212 NM_015167:-212 uc060kmb.1:-212 |
TATA-Box annotation
| Distance to TSS: | 224 |
|---|---|
| Nearest PromoterID: | NM_015167 |
| Entrez ID: | 23210 |
| Nearest Unigene: | Hs.514505 |
| Nearest Refseq: | NM_015167 |
| Nearest Ensembl: | ENSG00000070495 |
| Gene Name: | jumonji domain containing 6 |
| Gene Alias: | PSR |
| Gene Description: | arginine demethylase and lysine hydroxylase |
| Gene Type: | protein-coding |
| CpG%: | 0.115 |
| GC%: | 0.681592 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-38(CGACTTTAAAGG,-,0.00),-37(GACTTTAAAGGC,-,0.00),-36(ACTTTAAAGGCG,+,0.00)" |
