Difference between revisions of "TSS:Hg 168281.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENST00000397625.8:2 uc002jso.4:2 BC047003:2 AK021780:16 ENST00000445478.6:-43 uc002jsn.2:-43 AK294816:-43 AK314541:54 ENST00000585429.1:89 uc060kmf.1:89...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |PTDSR= | ||
| + | |PTDSR1= | ||
|all_trans=ENST00000397625.8:2 uc002jso.4:2 BC047003:2 AK021780:16 ENST00000445478.6:-43 uc002jsn.2:-43 AK294816:-43 AK314541:54 ENST00000585429.1:89 uc060kmf.1:89 AB011157:111 BC066654:111 AB073711:117 KJ893343:117 AB383913:118 ENST00000542934.5:-148 ENST00000303996.10:-148 uc060kmc.1:-148 uc060kmd.1:-148 EF527406:-148 EF527407:-148 ENST00000617192.4:-163 NM_001081461:-163 NM_015167:-163 uc060kmb.1:-163 | |all_trans=ENST00000397625.8:2 uc002jso.4:2 BC047003:2 AK021780:16 ENST00000445478.6:-43 uc002jsn.2:-43 AK294816:-43 AK314541:54 ENST00000585429.1:89 uc060kmf.1:89 AB011157:111 BC066654:111 AB073711:117 KJ893343:117 AB383913:118 ENST00000542934.5:-148 ENST00000303996.10:-148 uc060kmc.1:-148 uc060kmd.1:-148 EF527406:-148 EF527407:-148 ENST00000617192.4:-163 NM_001081461:-163 NM_015167:-163 uc060kmb.1:-163 | ||
|chr=chr17 | |chr=chr17 | ||
| Line 6: | Line 8: | ||
|distance_to_tss=185 | |distance_to_tss=185 | ||
|end=76726636 | |end=76726636 | ||
| + | |end_of_center_position=76726614 | ||
|entrez_id=23210 | |entrez_id=23210 | ||
|gc_percent=0.676617 | |gc_percent=0.676617 | ||
| − | |gene_alias=PSR | + | |gene_alias=PSR |
|gene_description=arginine demethylase and lysine hydroxylase | |gene_description=arginine demethylase and lysine hydroxylase | ||
|gene_id=23210 | |gene_id=23210 | ||
| Line 24: | Line 27: | ||
|species=human | |species=human | ||
|start=76726591 | |start=76726591 | ||
| + | |start_of_center_position=76726613 | ||
|strand=- | |strand=- | ||
|tata_box="1(CGACTTTAAAGG,-,0.00),2(GACTTTAAAGGC,-,0.00),3(ACTTTAAAGGCG,+,0.00)" | |tata_box="1(CGACTTTAAAGG,-,0.00),2(GACTTTAAAGGC,-,0.00),3(ACTTTAAAGGCG,+,0.00)" | ||
Revision as of 07:18, 15 May 2019
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 76726613 |
|---|---|
| End of the center position in the TSS region: | 76726614 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000397625.8 uc002jso.4 BC047003 |
|---|---|
| Distance: | 2 |
| Num_trans: | 25 |
| All_trans: | ENST00000397625.8:2 uc002jso.4:2 BC047003:2 AK021780:16 ENST00000445478.6:-43 uc002jsn.2:-43 AK294816:-43 AK314541:54 ENST00000585429.1:89 uc060kmf.1:89 AB011157:111 BC066654:111 AB073711:117 KJ893343:117 AB383913:118 ENST00000542934.5:-148 ENST00000303996.10:-148 uc060kmc.1:-148 uc060kmd.1:-148 EF527406:-148 EF527407:-148 ENST00000617192.4:-163 NM_001081461:-163 NM_015167:-163 uc060kmb.1:-163 |
TATA-Box annotation
| Distance to TSS: | 185 |
|---|---|
| Nearest PromoterID: | NM_015167 |
| Entrez ID: | 23210 |
| Nearest Unigene: | Hs.514505 |
| Nearest Refseq: | NM_015167 |
| Nearest Ensembl: | ENSG00000070495 |
| Gene Name: | jumonji domain containing 6 |
| Gene Alias: | PSR |
| Gene Description: | arginine demethylase and lysine hydroxylase |
| Gene Type: | protein-coding |
| CpG%: | 0.11 |
| GC%: | 0.676617 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "1(CGACTTTAAAGG,-,0.00),2(GACTTTAAAGGC,-,0.00),3(ACTTTAAAGGCG,+,0.00)" |
