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Difference between revisions of "TSS:Mm 16512.1"

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(Created page with "{{TSSDetail |all_trans=BC004646:16 BC027218:16 AK052236:26 ENSMUST00000131284.7:-38 AK173276:-38 BC021513:-54 AK049764:-65 ENSMUST00000116366.8:-67 NM_001048148:-67 uc008omc.1...")
 
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{{TSSDetail
 
{{TSSDetail
 +
|BC021513=
 
|all_trans=BC004646:16 BC027218:16 AK052236:26 ENSMUST00000131284.7:-38 AK173276:-38 BC021513:-54 AK049764:-65 ENSMUST00000116366.8:-67 NM_001048148:-67 uc008omc.1:-67 BC034599:-67 ENSMUST00000108807.8:-85 AK159801:-85
 
|all_trans=BC004646:16 BC027218:16 AK052236:26 ENSMUST00000131284.7:-38 AK173276:-38 BC021513:-54 AK049764:-65 ENSMUST00000116366.8:-67 NM_001048148:-67 uc008omc.1:-67 BC034599:-67 ENSMUST00000108807.8:-85 AK159801:-85
 
|chr=chr2
 
|chr=chr2
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|distance_to_tss=72
 
|distance_to_tss=72
 
|end=181365500
 
|end=181365500
 +
|end_of_center_position=181365495
 
|entrez_id=229007
 
|entrez_id=229007
 
|gc_percent=0.741294
 
|gc_percent=0.741294
|gene_alias=1500006I01Rik|BC021513
+
|gene_alias=1500006I01Rik
 
|gene_description="zinc finger, CCCH-type with G patch domain"
 
|gene_description="zinc finger, CCCH-type with G patch domain"
 
|gene_id=229007
 
|gene_id=229007
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|species=mouse
 
|species=mouse
 
|start=181365489
 
|start=181365489
 +
|start_of_center_position=181365494
 
|strand=+
 
|strand=+
 
|transcript_name=BC004646 BC027218
 
|transcript_name=BC004646 BC027218

Revision as of 12:29, 15 May 2019

Basic information about the TSS


TSS ID:mm_16512.1
Species:mouse
Chr:chr2
TSS Classification:yes
Start:181365489
End:181365500
Strand:+
TSS Score:1
Start of the center position in the TSS region:181365494
End of the center position in the TSS region:181365495



Gene and protein annotation


Transcript_name:BC004646 BC027218
Distance:16
GeneID:229007
HGNC/MGI_ID:MGI:2449939
UniProt_ID:Q05DS2
Gene_name:"zinc finger, CCCH-type with G patch domain"
Gene_symbol:Zgpat
Gene_synonyms:
Gene_source:MGI:2449939



Transcript annotation


Transcript_name:BC004646 BC027218
Distance:16
Num_trans:13
All_trans:BC004646:16 BC027218:16 AK052236:26 ENSMUST00000131284.7:-38 AK173276:-38 BC021513:-54 AK049764:-65 ENSMUST00000116366.8:-67 NM_001048148:-67 uc008omc.1:-67 BC034599:-67 ENSMUST00000108807.8:-85 AK159801:-85



TATA-Box annotation


Distance to TSS:72
Nearest PromoterID:NM_001048148
Entrez ID:229007
Nearest Unigene:Mm.87720
Nearest Refseq:NM_144894
Nearest Ensembl:ENSMUSG00000027582
Gene Name:"zinc finger, CCCH-type with G patch domain"
Gene Alias:1500006I01Rik
Gene Description:"zinc finger, CCCH-type with G patch domain"
Gene Type:protein-coding
CpG%:0.12
GC%:0.741294
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):