Difference between revisions of "TSS:Hg 100056.1"
From referenceTSS
| Line 6: | Line 6: | ||
|TILRR= | |TILRR= | ||
|TRIGNO2= | |TRIGNO2= | ||
| − | |all_trans= | + | |all_trans=ENST00000380875.7:-65 NM_144966:-65 NR_163238:-65 BX537574:-65 ENST00000380880.4:497 NM_001379081:497 NR_163239:497 NM_001370065:497 NM_001370063:497 NM_001370060:497 NR_163241:497 NR_163240:497 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
| Line 15: | Line 15: | ||
|entrez_id=158326 | |entrez_id=158326 | ||
|gc_percent=0.383085 | |gc_percent=0.383085 | ||
| − | |gene_alias=BNAR | + | |gene_alias=BNAR|C9orf143|C9orf145|C9orf154|MOTA|TILRR|TRIGNO2 |
|gene_description=FRAS1 related extracellular matrix 1 | |gene_description=FRAS1 related extracellular matrix 1 | ||
|gene_id=158326 | |gene_id=158326 | ||
| Line 28: | Line 28: | ||
|nearest_refseq=NM_144966 | |nearest_refseq=NM_144966 | ||
|nearest_unigene=Hs.50850 | |nearest_unigene=Hs.50850 | ||
| − | |num_trans= | + | |num_trans=12 |
|species=human | |species=human | ||
|start=14910924 | |start=14910924 | ||
|start_of_center_position=14910927 | |start_of_center_position=14910927 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=11(TCCCTTAAATGC,-,0.00),13(CCTTAAATGCCA,+,0.00) |
| − | |transcript_name= | + | |transcript_name=ENST00000380875.7 NM_144966 NR_163238 BX537574 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_100056.1 | |tss_id=hg_100056.1 | ||
Revision as of 17:28, 11 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 14910927 |
|---|---|
| End of the center position in the TSS region: | 14910928 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000380875.7 NM_144966 NR_163238 BX537574 |
|---|---|
| Distance: | -65 |
| Num_trans: | 12 |
| All_trans: | ENST00000380875.7:-65 NM_144966:-65 NR_163238:-65 BX537574:-65 ENST00000380880.4:497 NM_001379081:497 NR_163239:497 NM_001370065:497 NM_001370063:497 NM_001370060:497 NR_163241:497 NR_163240:497 |
TATA-Box annotation
| Distance to TSS: | 68 |
|---|---|
| Nearest PromoterID: | NM_144966 |
| Entrez ID: | 158326 |
| Nearest Unigene: | Hs.50850 |
| Nearest Refseq: | NM_144966 |
| Nearest Ensembl: | ENSG00000164946 |
| Gene Name: | FRAS1 related extracellular matrix 1 |
| Gene Alias: | BNAR |
| Gene Description: | FRAS1 related extracellular matrix 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.383085 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 11(TCCCTTAAATGC,-,0.00),13(CCTTAAATGCCA,+,0.00) |
