Difference between revisions of "TSS:Hg 100204.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000495827. | + | |all_trans=ENST00000495827.3:0 NM_001321883:0 NM_001010915:0 NM_001321903:0 BX648779:0 BC114215:8 KJ896252:25 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.1 | |cpg_percent=0.1 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=6 |
|end=21031652 | |end=21031652 | ||
|end_of_center_position=21031635 | |end_of_center_position=21031635 | ||
| Line 19: | Line 19: | ||
|hgnc_mgi_id=HGNC:20920 | |hgnc_mgi_id=HGNC:20920 | ||
|nearest_ensembl=ENSG00000188921 | |nearest_ensembl=ENSG00000188921 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001010915 |
|nearest_refseq=NM_001010915 | |nearest_refseq=NM_001010915 | ||
|nearest_unigene=Hs.716678 | |nearest_unigene=Hs.716678 | ||
| − | |num_trans= | + | |num_trans=7 |
|species=human | |species=human | ||
|start=21031616 | |start=21031616 | ||
|start_of_center_position=21031634 | |start_of_center_position=21031634 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000495827. | + | |transcript_name=ENST00000495827.3 NM_001321883 NM_001010915 NM_001321903 BX648779 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_100204.1 | |tss_id=hg_100204.1 | ||
Revision as of 14:19, 14 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 21031634 |
|---|---|
| End of the center position in the TSS region: | 21031635 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000495827.3 NM_001321883 NM_001010915 NM_001321903 BX648779 |
|---|---|
| Distance: | 0 |
| Num_trans: | 7 |
| All_trans: | ENST00000495827.3:0 NM_001321883:0 NM_001010915:0 NM_001321903:0 BX648779:0 BC114215:8 KJ896252:25 |
TATA-Box annotation
| Distance to TSS: | 6 |
|---|---|
| Nearest PromoterID: | NM_001010915 |
| Entrez ID: | 401494 |
| Nearest Unigene: | Hs.716678 |
| Nearest Refseq: | NM_001010915 |
| Nearest Ensembl: | ENSG00000188921 |
| Gene Name: | 3-hydroxyacyl-CoA dehydratase 4 |
| Gene Alias: | PTPLAD2 |
| Gene Description: | 3-hydroxyacyl-CoA dehydratase 4 |
| Gene Type: | protein-coding |
| CpG%: | 0.1 |
| GC%: | 0.711443 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
