Difference between revisions of "TSS:Hg 100300.1"
From referenceTSS
| Line 2: | Line 2: | ||
|HELN1= | |HELN1= | ||
|HUB= | |HUB= | ||
| − | |all_trans=ENST00000380117.5 | + | |all_trans=ENST00000380117.5:23 U12431:57 U29943:57 ENST00000397312.7:120 NM_001351455:120 NM_001351472:120 NM_004432:120 NM_001351468:120 NM_001351467:120 NM_001351464:120 NM_001351463:120 NM_001351477:120 NM_001351457:120 NM_001351461:120 ENST00000462649.1:186 LF385423:295 MA621000:295 AB209294:295 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.095 | |cpg_percent=0.095 | ||
|distance=23 | |distance=23 | ||
| − | |distance_to_tss=- | + | |distance_to_tss=-125 |
|end=23826370 | |end=23826370 | ||
|end_of_center_position=23826365 | |end_of_center_position=23826365 | ||
|entrez_id=1993 | |entrez_id=1993 | ||
|gc_percent=0.621891 | |gc_percent=0.621891 | ||
| − | |gene_alias=HEL-N1 | + | |gene_alias=HEL-N1|HELN1|HUB |
|gene_description=ELAV like RNA binding protein 2 | |gene_description=ELAV like RNA binding protein 2 | ||
|gene_id=1993 | |gene_id=1993 | ||
| − | |gene_name=ELAV like | + | |gene_name=ELAV like RNA binding protein 2 |
|gene_source=HGNC:3313 | |gene_source=HGNC:3313 | ||
|gene_symbol=ELAVL2 | |gene_symbol=ELAVL2 | ||
| Line 24: | Line 24: | ||
|nearest_refseq=NM_004432 | |nearest_refseq=NM_004432 | ||
|nearest_unigene=Hs.166109 | |nearest_unigene=Hs.166109 | ||
| − | |num_trans= | + | |num_trans=18 |
|species=human | |species=human | ||
|start=23826359 | |start=23826359 | ||
|start_of_center_position=23826364 | |start_of_center_position=23826364 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000380117.5 | + | |transcript_name=ENST00000380117.5 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_100300.1 | |tss_id=hg_100300.1 | ||
Revision as of 14:22, 14 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 23826364 |
|---|---|
| End of the center position in the TSS region: | 23826365 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000380117.5 |
|---|---|
| Distance: | 23 |
| Num_trans: | 18 |
| All_trans: | ENST00000380117.5:23 U12431:57 U29943:57 ENST00000397312.7:120 NM_001351455:120 NM_001351472:120 NM_004432:120 NM_001351468:120 NM_001351467:120 NM_001351464:120 NM_001351463:120 NM_001351477:120 NM_001351457:120 NM_001351461:120 ENST00000462649.1:186 LF385423:295 MA621000:295 AB209294:295 |
TATA-Box annotation
| Distance to TSS: | -125 |
|---|---|
| Nearest PromoterID: | NM_004432 |
| Entrez ID: | 1993 |
| Nearest Unigene: | Hs.166109 |
| Nearest Refseq: | NM_004432 |
| Nearest Ensembl: | ENSG00000107105 |
| Gene Name: | ELAV like RNA binding protein 2 |
| Gene Alias: | HEL-N1 |
| Gene Description: | ELAV like RNA binding protein 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.095 |
| GC%: | 0.621891 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
