Difference between revisions of "TSS:Hg 100471.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|GIL= | |GIL= | ||
| − | |all_trans=ENST00000493581.1:0 | + | |all_trans=ENST00000493581.1:0 ENST00000297991.6:0 ENST00000643650.1:0 NM_001318144:0 NM_004925:0 AK095363:0 AK292208:0 AK315760:0 AK303206:0 ENST00000463983.5:5 AB001325:14 BC013566:20 ENST00000645858.1:34 AJ493597:34 KJ890695:56 CR541991:57 BT007199:57 CR542025:57 ENST00000473153.1:78 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.115 | |cpg_percent=0.115 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=-1 |
|end=33447602 | |end=33447602 | ||
|end_of_center_position=33447595 | |end_of_center_position=33447595 | ||
|entrez_id=360 | |entrez_id=360 | ||
|gc_percent=0.766169 | |gc_percent=0.766169 | ||
| − | |gene_alias=AQP-3 | + | |gene_alias=AQP-3|GIL |
|gene_description=aquaporin 3 (Gill blood group) | |gene_description=aquaporin 3 (Gill blood group) | ||
|gene_id=360 | |gene_id=360 | ||
| Line 20: | Line 20: | ||
|hgnc_mgi_id=HGNC:636 | |hgnc_mgi_id=HGNC:636 | ||
|nearest_ensembl=ENSG00000165272 | |nearest_ensembl=ENSG00000165272 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001318144 |
|nearest_refseq=NM_004925 | |nearest_refseq=NM_004925 | ||
|nearest_unigene=Hs.234642 | |nearest_unigene=Hs.234642 | ||
| − | |num_trans= | + | |num_trans=19 |
|species=human | |species=human | ||
|start=33447586 | |start=33447586 | ||
|start_of_center_position=33447594 | |start_of_center_position=33447594 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-34(TCCTATAAAGGG,+,0.00),-34(TCCTATAAAGGG,-,0.00) |
| − | |transcript_name=ENST00000493581.1 | + | |transcript_name=ENST00000493581.1 ENST00000297991.6 ENST00000643650.1 NM_001318144 NM_004925 AK095363 AK292208 AK315760 AK303206 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_100471.1 | |tss_id=hg_100471.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=A0A2R8YD22 Q92482 |
}} | }} | ||
Revision as of 15:20, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 33447594 |
|---|---|
| End of the center position in the TSS region: | 33447595 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000493581.1 ENST00000297991.6 ENST00000643650.1 NM_001318144 NM_004925 AK095363 AK292208 AK315760 AK303206 |
|---|---|
| Distance: | 0 |
| Num_trans: | 19 |
| All_trans: | ENST00000493581.1:0 ENST00000297991.6:0 ENST00000643650.1:0 NM_001318144:0 NM_004925:0 AK095363:0 AK292208:0 AK315760:0 AK303206:0 ENST00000463983.5:5 AB001325:14 BC013566:20 ENST00000645858.1:34 AJ493597:34 KJ890695:56 CR541991:57 BT007199:57 CR542025:57 ENST00000473153.1:78 |
TATA-Box annotation
| Distance to TSS: | -1 |
|---|---|
| Nearest PromoterID: | NM_001318144 |
| Entrez ID: | 360 |
| Nearest Unigene: | Hs.234642 |
| Nearest Refseq: | NM_004925 |
| Nearest Ensembl: | ENSG00000165272 |
| Gene Name: | aquaporin 3 (Gill blood group) |
| Gene Alias: | AQP-3 |
| Gene Description: | aquaporin 3 (Gill blood group) |
| Gene Type: | protein-coding |
| CpG%: | 0.115 |
| GC%: | 0.766169 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -34(TCCTATAAAGGG,+,0.00),-34(TCCTATAAAGGG,-,0.00) |
