Difference between revisions of "TSS:Hg 100514.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000379089.5:0 ENST00000379087.5:0 ENST00000379084.5:0 ENST00000379081.5:0 ENST00000379080.5:0 ENST00000445726.5:0 ENST00000297620.8:0 ENST00000422409.5:0 ENST00000379078.1:0 NM_001184945:0 | + | |all_trans=ENST00000379089.5:0 ENST00000379087.5:0 ENST00000379084.5:0 ENST00000379081.5:0 ENST00000379080.5:0 ENST00000651358.1:0 ENST00000445726.5:0 ENST00000297620.8:0 ENST00000422409.5:0 ENST00000379078.1:0 NM_001184945:0 NM_147202:0 NM_001184942:0 NM_001184943:0 NM_001184941:0 NM_001184940:0 AK123887:0 BC041009:0 AK096350:0 AK294054:0 AK299882:0 KJ895817:270 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.08 | |cpg_percent=0.08 | ||
| Line 19: | Line 19: | ||
|hgnc_mgi_id=HGNC:19920 | |hgnc_mgi_id=HGNC:19920 | ||
|nearest_ensembl=ENSG00000164970 | |nearest_ensembl=ENSG00000164970 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001184943 |
|nearest_refseq=NM_147202 | |nearest_refseq=NM_147202 | ||
|nearest_unigene=Hs.493771 | |nearest_unigene=Hs.493771 | ||
| − | |num_trans= | + | |num_trans=22 |
|species=human | |species=human | ||
|start=34458533 | |start=34458533 | ||
|start_of_center_position=34458558 | |start_of_center_position=34458558 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000379089.5 ENST00000379087.5 ENST00000379084.5 ENST00000379081.5 ENST00000379080.5 ENST00000445726.5 ENST00000297620.8 ENST00000422409.5 ENST00000379078.1 NM_001184945 | + | |transcript_name=ENST00000379089.5 ENST00000379087.5 ENST00000379084.5 ENST00000379081.5 ENST00000379080.5 ENST00000651358.1 ENST00000445726.5 ENST00000297620.8 ENST00000422409.5 ENST00000379078.1 NM_001184945 NM_147202 NM_001184942 NM_001184943 NM_001184941 NM_001184940 AK123887 BC041009 AK096350 AK294054 AK299882 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_100514.1 | |tss_id=hg_100514.1 | ||
Revision as of 15:21, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 34458558 |
|---|---|
| End of the center position in the TSS region: | 34458559 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000379089.5 ENST00000379087.5 ENST00000379084.5 ENST00000379081.5 ENST00000379080.5 ENST00000651358.1 ENST00000445726.5 ENST00000297620.8 ENST00000422409.5 ENST00000379078.1 NM_001184945 NM_147202 NM_001184942 NM_001184943 NM_001184941 NM_001184940 AK123887 BC041009 AK096350 AK294054 AK299882 |
|---|---|
| Distance: | 0 |
| Num_trans: | 22 |
| All_trans: | ENST00000379089.5:0 ENST00000379087.5:0 ENST00000379084.5:0 ENST00000379081.5:0 ENST00000379080.5:0 ENST00000651358.1:0 ENST00000445726.5:0 ENST00000297620.8:0 ENST00000422409.5:0 ENST00000379078.1:0 NM_001184945:0 NM_147202:0 NM_001184942:0 NM_001184943:0 NM_001184941:0 NM_001184940:0 AK123887:0 BC041009:0 AK096350:0 AK294054:0 AK299882:0 KJ895817:270 |
TATA-Box annotation
| Distance to TSS: | 11 |
|---|---|
| Nearest PromoterID: | NM_001184943 |
| Entrez ID: | 203259 |
| Nearest Unigene: | Hs.493771 |
| Nearest Refseq: | NM_147202 |
| Nearest Ensembl: | ENSG00000164970 |
| Gene Name: | family with sequence similarity 219 member A |
| Gene Alias: | C9orf25 |
| Gene Description: | family with sequence similarity 219 member A |
| Gene Type: | protein-coding |
| CpG%: | 0.08 |
| GC%: | 0.681592 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
