Difference between revisions of "TSS:Hg 100543.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000564224.1:0 ENST00000421828. | + | |all_trans=ENST00000564224.1:0 ENST00000421828.7:0 ENST00000416454.5:0 ENST00000544078.2:0 NR_135148:0 NM_001320038:0 NM_001320037:0 BC037171:0 AK296005:0 BC066358:0 ENST00000423809.5:-46 ENST00000555007.1:492 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.045 | |cpg_percent=0.045 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=19 |
|end=34666066 | |end=34666066 | ||
|end_of_center_position=34666027 | |end_of_center_position=34666027 | ||
| Line 11: | Line 11: | ||
|gene_alias=- | |gene_alias=- | ||
|gene_description=uncharacterized LOC730098 | |gene_description=uncharacterized LOC730098 | ||
| − | |gene_id= | + | |gene_id=730098 |
| − | |gene_name= | + | |gene_name=uncharacterized LOC730098 |
| − | |gene_source= | + | |gene_source=EntrezGene:730098 |
| − | |gene_symbol= | + | |gene_symbol=LOC730098 |
| − | |gene_synonyms= | + | |gene_synonyms= |
|gene_type=protein-coding | |gene_type=protein-coding | ||
| − | |hgnc_mgi_id= | + | |hgnc_mgi_id= |
|nearest_ensembl=ENSG00000187186 | |nearest_ensembl=ENSG00000187186 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001320038 |
|nearest_refseq=NM_001320037 | |nearest_refseq=NM_001320037 | ||
|nearest_unigene=Hs.459590 | |nearest_unigene=Hs.459590 | ||
| − | |num_trans= | + | |num_trans=12 |
|species=human | |species=human | ||
|start=34665986 | |start=34665986 | ||
|start_of_center_position=34666026 | |start_of_center_position=34666026 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000564224.1 ENST00000421828. | + | |transcript_name=ENST00000564224.1 ENST00000421828.7 ENST00000416454.5 ENST00000544078.2 NR_135148 NM_001320038 NM_001320037 BC037171 AK296005 BC066358 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_100543.1 | |tss_id=hg_100543.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=B7Z3J9 H3BQ31 |
}} | }} | ||
Revision as of 15:22, 15 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 34666026 |
|---|---|
| End of the center position in the TSS region: | 34666027 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000564224.1 ENST00000421828.7 ENST00000416454.5 ENST00000544078.2 NR_135148 NM_001320038 NM_001320037 BC037171 AK296005 BC066358 |
|---|---|
| Distance: | 0 |
| Num_trans: | 12 |
| All_trans: | ENST00000564224.1:0 ENST00000421828.7:0 ENST00000416454.5:0 ENST00000544078.2:0 NR_135148:0 NM_001320038:0 NM_001320037:0 BC037171:0 AK296005:0 BC066358:0 ENST00000423809.5:-46 ENST00000555007.1:492 |
TATA-Box annotation
| Distance to TSS: | 19 |
|---|---|
| Nearest PromoterID: | NM_001320038 |
| Entrez ID: | 730098 |
| Nearest Unigene: | Hs.459590 |
| Nearest Refseq: | NM_001320037 |
| Nearest Ensembl: | ENSG00000187186 |
| Gene Name: | uncharacterized LOC730098 |
| Gene Alias: | - |
| Gene Description: | uncharacterized LOC730098 |
| Gene Type: | protein-coding |
| CpG%: | 0.045 |
| GC%: | 0.641791 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
