Difference between revisions of "TSS:Hg 100665.1"
From referenceTSS
| Line 5: | Line 5: | ||
|SMP1= | |SMP1= | ||
|SPAG3= | |SPAG3= | ||
| − | |all_trans=ENST00000340291.6:0 ENST00000475644.5:0 | + | |all_trans=ENST00000340291.6:0 ENST00000475644.5:0 ENST00000396638.7:0 NM_001366760:0 NR_159431:0 NM_172312:0 NM_001039592:0 S83157:0 U12978:0 HM005490:0 ENST00000484764.5:52 ENST00000471631.1:65 ENST00000495667.5:67 AK302313:70 BC019247:82 ENST00000463889.5:85 ENST00000472605.1:91 DQ890798:93 EU176503:93 ENST00000497810.1:94 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.06 | |cpg_percent=0.06 | ||
| Line 14: | Line 14: | ||
|entrez_id=26206 | |entrez_id=26206 | ||
|gc_percent=0.61194 | |gc_percent=0.61194 | ||
| − | |gene_alias=BS-84 | + | |gene_alias=BS-84|CILD28|CT142|HSD-1|SMP1|SPAG3|hSMP-1 |
|gene_description=sperm associated antigen 8 | |gene_description=sperm associated antigen 8 | ||
|gene_id=26206 | |gene_id=26206 | ||
| Line 25: | Line 25: | ||
|hgnc_mgi_id=HGNC:14105 | |hgnc_mgi_id=HGNC:14105 | ||
|nearest_ensembl=ENSG00000137098 | |nearest_ensembl=ENSG00000137098 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NR_159431 |
|nearest_refseq=NM_012436 | |nearest_refseq=NM_012436 | ||
|nearest_unigene=Hs.256747 | |nearest_unigene=Hs.256747 | ||
| − | |num_trans= | + | |num_trans=20 |
|species=human | |species=human | ||
|start=35812239 | |start=35812239 | ||
|start_of_center_position=35812258 | |start_of_center_position=35812258 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000340291.6 ENST00000475644.5 NM_172312 NM_001039592 | + | |transcript_name=ENST00000340291.6 ENST00000475644.5 ENST00000396638.7 NM_001366760 NR_159431 NM_172312 NM_001039592 S83157 U12978 HM005490 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_100665.1 | |tss_id=hg_100665.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=Q99932 | + | |uniprot_id=A0A140VJV0 Q99932 |
}} | }} | ||
Revision as of 15:25, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 35812258 |
|---|---|
| End of the center position in the TSS region: | 35812259 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000340291.6 ENST00000475644.5 ENST00000396638.7 NM_001366760 NR_159431 NM_172312 NM_001039592 S83157 U12978 HM005490 |
|---|---|
| Distance: | 0 |
| Num_trans: | 20 |
| All_trans: | ENST00000340291.6:0 ENST00000475644.5:0 ENST00000396638.7:0 NM_001366760:0 NR_159431:0 NM_172312:0 NM_001039592:0 S83157:0 U12978:0 HM005490:0 ENST00000484764.5:52 ENST00000471631.1:65 ENST00000495667.5:67 AK302313:70 BC019247:82 ENST00000463889.5:85 ENST00000472605.1:91 DQ890798:93 EU176503:93 ENST00000497810.1:94 |
TATA-Box annotation
| Distance to TSS: | 4 |
|---|---|
| Nearest PromoterID: | NR_159431 |
| Entrez ID: | 26206 |
| Nearest Unigene: | Hs.256747 |
| Nearest Refseq: | NM_012436 |
| Nearest Ensembl: | ENSG00000137098 |
| Gene Name: | sperm associated antigen 8 |
| Gene Alias: | BS-84 |
| Gene Description: | sperm associated antigen 8 |
| Gene Type: | protein-coding |
| CpG%: | 0.06 |
| GC%: | 0.61194 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
